FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACA2 (Adenylate kinase OS=Bacillus amyloliquefaciens (strain FZB42) GN=adk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V +G PG GKGT   R+    G+PHI+TGD+ R  +    PL  +    + +G+LV DE+ I ++ +RL  G+   E GF+LDGFPRTV QAE LE + +     ID VIN+K+ +++L+
Sbjct:    4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALENILEEYGKPIDYVINIKVDKDSLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_ARCFU (Adenylate kinase OS=Archaeoglobus fulgidus GN=adk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            +FLG PG GKGT A R+S   G+P I+TGD++R+ +A    L  +  E + +G+LV DE++I ++ +RL+  +   E GFILDGFPRT+ QAE L+ +       ID VIN+ + EE ++
Sbjct:    4 IFLGPPGAGKGTQAKRVSEKYGIPQISTGDMLREAVAKGTELGKKAKEYMDKGELVPDEVVIGIVKERLQQPDC--EKGFILDGFPRTLAQAEALDEMLKELNKKIDAVINVVVPEEEVV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANC5 (Adenylate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=adk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSD+I++ +L  RL  G+A    GFILDG+PR V QA  L+ +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARL--GQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANAC (Adenylate kinase OS=Xanthomonas axonopodis pv. citri GN=adk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSD+I++ +L  RL  G+A    GFILDG+PR V QA  L+ +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARL--GQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THEMA (Adenylate kinase OS=Thermotoga maritima GN=adk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.090e-20
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEG 604
            VFLG PG GKGTYA RL  + G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+G
Sbjct:    6 VFLGPPGAGKGTYAKRLQEITGIPHISTGDIFRDIVKKENDELGKKIKEIMERGELVPDELVNEVVKRRL--SEKDCERGFILDGYPRTVAQAEFLDG 101          

HSP 2 Score: 20.7866 bits (42), Expect = 3.090e-20
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++IC +CG  YN+
Sbjct:  126 RLTARRICPKCGRIYNL 142          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_METSB (Adenylate kinase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=adk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 53/131 (40.46%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLA---NASEEDM 682
            VFLG PG GKGT ++RL     +P ++TGD++R  + +  P+  +   I+  G LV DE+++ +++ R++  +AK   GFILDGFPRTV+QAE L  +       +D VI LK+ ++ALLA   N ++E +
Sbjct:    4 VFLGPPGAGKGTQSTRLQQKFNIPQLSTGDMLRAAVKAGTPVGLKAKAIMDAGGLVPDEVVVGIIADRIDEPDAK--EGFILDGFPRTVKQAEALADILIKKNMKLDAVIELKVDDKALLARIENRAQESL 132          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_RAT (Adenylate kinase 2, mitochondrial OS=Rattus norvegicus GN=Ak2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ V LG PG GKGT A +L+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K LE    K   GF+LDGFPRTV+QAE+L+ + D     +D VI   +++  L+
Sbjct:   16 IRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPSCKN--GFLLDGFPRTVKQAEMLDDLMDKRKEKLDSVIEFSIQDSLLI 136          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_MOUSE (Adenylate kinase 2, mitochondrial OS=Mus musculus GN=Ak2 PE=1 SV=5)

HSP 1 Score: 98.2117 bits (243), Expect = 4.672e-20
Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ V LG PG GKGT A +L+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K LE    K   GF+LDGFPRTVRQAE+L+ + +     +D VI   +++  L+
Sbjct:   16 IRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPSCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQDSLLI 136          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOCE (Adenylate kinase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.233e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLANASEEDM 682
            + LG PG GKGT A  +S  L +PH++TGD+ R  +  + PL  +  E + +G+LV DE+ + ++  RL  G      GFILDGFPRT+ QAE L+ V  + + INL   + ALL +  +ED+
Sbjct:    4 ILLGAPGAGKGTQAKIISEKLNIPHVSTGDIFRANIKGNTPLGQKAKEYMDKGELVPDELTVEIVKDRL--GNVDCVNGFILDGFPRTIPQAEYLDKVL-VQMNINL---DVALLIDVKDEDI 120          

HSP 2 Score: 24.6386 bits (52), Expect = 5.233e-20
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  +++C+ CG  YNV
Sbjct:  123 RMSGRRVCTNCGATYNV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CORU7 (Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A  LS+ L +PHI+TGDL R  ++    L  Q  E +  GKLV  E+  N++  RLE  EA    GF+LDGFPRT+ QA++LE +       +D VIN ++ E+ ++
Sbjct:    4 VLLGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVPTEVTANMVRARLE--EADAANGFLLDGFPRTIEQADLLEEMLKEKDLKLDAVINYQVSEDVVV 121          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BACA22.097e-2042.50Adenylate kinase OS=Bacillus amyloliquefaciens (st... [more]
KAD_ARCFU2.097e-2043.33Adenylate kinase OS=Archaeoglobus fulgidus GN=adk ... [more]
KAD_XANC52.739e-2044.17Adenylate kinase OS=Xanthomonas campestris pv. ves... [more]
KAD_XANAC2.739e-2044.17Adenylate kinase OS=Xanthomonas axonopodis pv. cit... [more]
KAD_THEMA3.090e-2051.02Adenylate kinase OS=Thermotoga maritima GN=adk PE=... [more]
KAD_METSB3.577e-2040.46Adenylate kinase OS=Methylocella silvestris (strai... [more]
KAD2_RAT3.577e-2043.09Adenylate kinase 2, mitochondrial OS=Rattus norveg... [more]
KAD2_MOUSE4.672e-2043.09Adenylate kinase 2, mitochondrial OS=Mus musculus ... [more]
KAD_CLOCE5.233e-2041.46Adenylate kinase OS=Clostridium cellulolyticum (st... [more]
KAD_CORU76.102e-2044.17Adenylate kinase OS=Corynebacterium urealyticum (s... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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