FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CORA7 (Adenylate kinase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=adk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 56/134 (41.79%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLRE----EALLANASEED 679
            +++V LG PG GKGT A+ LS  LGVPHI+TGDL R  +    PL  +    +  GKLV  ++   ++  RL   +AK   GF+LDGFPRTV+QA+ILE +       +D V+N ++ E    E +LA    +D
Sbjct:    1 MRYVLLGPPGAGKGTQAALLSEKLGVPHISTGDLFRANIGEGTPLGLEAKSYIDAGKLVPTDVTARMVEDRLNQDDAKD--GFLLDGFPRTVQQADILEKLLSDKDLKLDGVLNFEVSEDVVVERMLARGRADD 132          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACP2 (Adenylate kinase OS=Bacillus pumilus (strain SAFR-032) GN=adk PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V +G PG GKGT A R+ +  G+PHI+TGD+ R  +     L  +    + +G+LV DE+ I ++ +RL  G+   E GF+LDGFPRTV QAE LE +       ID VIN+K+ ++AL+
Sbjct:    4 VLMGLPGAGKGTQAERIVDDYGIPHISTGDMFRAAMKEETQLGLEAKSFIDKGELVPDEVTIGIVRERL--GKNDCEQGFLLDGFPRTVAQAEALEDILKDLGRTIDYVINIKVDKDALM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THEM4 (Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=adk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.807e-20
Identity = 45/98 (45.92%), Postives = 70/98 (71.43%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV 607
            VFLG PG GKGTYA  L  +LG+PHI+TGD+ R+E+++   L  ++++I+ +G+LV D++   ++ +RL   + K   GFILDG+PRTV QA+ L+ +
Sbjct:    4 VFLGPPGAGKGTYAKELKEILGIPHISTGDMFREEISAKSELGRKVEDILKRGELVPDDLTNVIVKERLSKPDCK--KGFILDGYPRTVAQAKALDEI 99          

HSP 2 Score: 20.7866 bits (42), Expect = 6.807e-20
Identity = 6/17 (35.29%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            ++  ++IC  CG  YN+
Sbjct:  123 RISNRRICKNCGKIYNL 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANOR (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae GN=adk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSD+I++ +L  RL  G+A    GFILDG+PR V QA  L  +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARL--GQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANOM (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=adk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A+RL +   +PHI+TGDL+R E+A+  PL  +  E++++G LVSD+I++ +L  RL  G+A    GFILDG+PR V QA  L  +       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARL--GQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_METNO (Adenylate kinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=adk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 49/125 (39.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANASE 673
            + LG PG GKGT ++R+    G+P ++TGD++R  +A+  P+  Q   I+  G LV DE+++ +++ R++  EA    GFILDGFPRTV QA+ L+ +       +D VI  ++ EEALL   ++
Sbjct:    4 ILLGPPGAGKGTQSARIVEQFGIPQLSTGDMLRAAVAARTPVGLQAKSIMESGGLVPDEVVVGIVADRID--EADARKGFILDGFPRTVAQAKALDAMLAAKGLSLDAVIEFRVDEEALLGRIAK 126          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_GEOTN (Adenylate kinase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=adk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V +G PG GKGT A ++    G+PHI+TGD+ R  +    PL  Q  E + +G LV DE+ I ++ +RL   + +   GF+LDGFPRTV QAE LE +       +D VI++ +R++ L+
Sbjct:    4 VLMGLPGAGKGTQAEKIVETYGIPHISTGDMFRAAMKEGTPLGLQAKEYIDRGDLVPDEVTIGIVRERLSKDDCQN--GFLLDGFPRTVAQAEALEAMLAEIGRKLDYVIHIDVRQDVLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_PONAB (Adenylate kinase 2, mitochondrial OS=Pongo abelii GN=AK2 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ V LG PG GKGT A RL+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K LE    K   GF+LDGFPRTVRQAE+L+ + +     +D VI   + +  L+
Sbjct:   16 IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 136          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_HUMAN (Adenylate kinase 2, mitochondrial OS=Homo sapiens GN=AK2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            ++ V LG PG GKGT A RL+    V H+ATGD++R  +AS   L  +L   +  GKLVSDE+++ L+ K LE    K   GF+LDGFPRTVRQAE+L+ + +     +D VI   + +  L+
Sbjct:   16 IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 136          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_NITWN (Adenylate kinase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=adk PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            + LG PG GKGT A RL +  G+  ++TGD++R  +A+  P+  +  +I++ G LV D+++I ++S RLE  +AK   GFILDGFPRTV QAE L+ +       +D VI L++ E ALL
Sbjct:    4 ILLGPPGAGKGTQAQRLVHHYGIIQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDDVVIGIISDRLEQADAKD--GFILDGFPRTVPQAEALDILLQSKNLALDAVIELRVDESALL 121          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_CORA76.102e-2041.79Adenylate kinase OS=Corynebacterium aurimucosum (s... [more]
KAD_BACP26.102e-2043.33Adenylate kinase OS=Bacillus pumilus (strain SAFR-... [more]
KAD_THEM46.807e-2045.92Adenylate kinase OS=Thermosipho melanesiensis (str... [more]
KAD_XANOR7.969e-2044.17Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_XANOM7.969e-2044.17Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_METNO1.041e-1939.20Adenylate kinase OS=Methylobacterium nodulans (str... [more]
KAD_GEOTN1.041e-1940.83Adenylate kinase OS=Geobacillus thermodenitrifican... [more]
KAD2_PONAB1.041e-1943.90Adenylate kinase 2, mitochondrial OS=Pongo abelii ... [more]
KAD2_HUMAN1.041e-1943.90Adenylate kinase 2, mitochondrial OS=Homo sapiens ... [more]
KAD_NITWN1.359e-1944.17Adenylate kinase OS=Nitrobacter winogradskyi (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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