FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THEYD (Adenylate kinase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=adk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            VFLG PG GKGT A RL    G+P I+TGDL+R  +A+  PL  +    + +G+LV D++++ ++ +RL   + K   GFILDGFPR V QAE L+ +       +DL +NL +  + L+
Sbjct:    4 VFLGAPGAGKGTQAKRLVEKYGIPQISTGDLLRAAVAAGTPLGKEAKAYMDRGELVPDKVVLGMVKERLSQNDCK--KGFILDGFPRNVAQAEALDKMLSEMNMPLDLALNLDVPFDDLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SYNPX (Adenylate kinase OS=Synechococcus sp. (strain WH8102) GN=adk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLRE----EALLANASEED 679
            +FLG PG GKGT A+RL N  G+ H++TGDL+R E+A+   L  + + ++++G+LVSD +++ ++  +L+ G + G  G++LDGFPRTV QA+ LE + D     I+ V+ L+L +    E LLA   ++D
Sbjct:    6 LFLGPPGAGKGTQAARLCNANGMSHLSTGDLLRSEVAAGTALGQEAEAVMNRGELVSDALVLAIVESQLK-GLSSG--GWLLDGFPRTVPQADALEPLLDELKQPIEAVVLLELDDAVLIERLLARGRDDD 133          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_METAC (Adenylate kinase OS=Methanosarcina acetivorans GN=adk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 50/124 (40.32%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLANAS 670
            +  G PG GKGT A +L +  G+P I+TGD++R  +     L       + +G+LV D+++I ++  RL   EA  E GFILDG+PRTV QA+ LE + D     ID+V+NL++ +E L+   S
Sbjct:    4 ILFGPPGAGKGTQAKKLVDFYGIPQISTGDILRANVREGTELGLAAKAYMDKGELVPDQVLIGIIKNRL--NEADCEKGFILDGYPRTVPQADALEAILDEIEKPIDVVLNLEVPDEVLVGRIS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_GEOKA (Adenylate kinase OS=Geobacillus kaustophilus GN=adk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V +G PG GKGT A ++    G+PHI+TGD+ R  +    PL  Q  + + +G LV DE+ I ++ +RL   +   + GF+LDGFPRTV QAE LE +       +D VI++ +R+E L+
Sbjct:    4 VLMGLPGAGKGTQAGKIVEAYGIPHISTGDMFRAAIKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKEDC--QHGFLLDGFPRTVAQAEALETLLSEIGRKLDYVIHIDVRQEVLM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_MOOTA (Adenylate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.283e-19
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A  ++  L +PHI+TGD+ R+ +    PL  Q +  +  G+LV DE+ I L+ +RL   + +   GF+LDGFPRTV QAE L+         +D VI++++  +ALL
Sbjct:    4 VLLGPPGAGKGTQAREINQRLAIPHISTGDMFREAIKRGTPLGRQAEVYIKGGRLVPDEVTIGLVQERLVQPDCRN--GFLLDGFPRTVAQAEALDSWLSSRGERLDAVIDIEVPRDALL 121          

HSP 2 Score: 21.557 bits (44), Expect = 4.283e-19
Identity = 5/13 (38.46%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            +++C +CG  Y+V
Sbjct:  127 RRVCRQCGATYHV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SYNJB (Adenylate kinase OS=Synechococcus sp. GN=adk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLA 661
            +FLG PG GKGT A RL+ +   P I+TGDL+R E+ +  PL  Q    +  G+LV DE++I ++  +L+      E G+ILDGFPRT+ QAE LE +      D D V+NL++ +E ++A
Sbjct:    5 IFLGPPGAGKGTQAERLAAIYHTPKISTGDLLRAEVKAQTPLGCQAKVYMDAGELVPDEVLIGMVKGQLQQSP---EQGWILDGFPRTLAQAEALEELLQELGQDYDYVLNLEVPDEVVVA 122          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STRM5 (Adenylate kinase OS=Stenotrophomonas maltophilia (strain R551-3) GN=adk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A+RL   LG+ HI+TGD++R E+A+   L  Q   ++  G LVSD+I++ +L  RL   +A    GFILDG+PR V QA  ++G+       +D V+ L +  E L+
Sbjct:    4 VLLGPPGSGKGTQATRLKEKLGIAHISTGDMLRAEIAAGSELGKQAKAVMDAGNLVSDDILLGMLESRLT--QADVAKGFILDGYPRNVAQANAMDGLLAKIGQPLDAVVQLDVATELLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CELJU (Adenylate kinase OS=Cellvibrio japonicus (strain Ueda107) GN=adk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAE-ILEGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  +    G+P I+TGD++R  + +  PL  Q  +I++ G LVSD++II L+ +R+ + +     GF+ DGFPRT+ QAE +LE    ID VI + + +E ++A  S
Sbjct:    4 ILLGAPGAGKGTQAQLIMEHFGIPQISTGDMLRAAVKAGTPLGLQAKDIMASGGLVSDDLIIALVKERISSSDCSN--GFLFDGFPRTIPQAEALLEADVHIDHVIEIHVPDEEIVARLS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACLD (Adenylate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=adk PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V +G PG GKGT A R+    G+PHI+TGD+ R  +     L  +    + +G+LV DE+ I ++ +RL   +  G  GF+LDGFPRTV QAE LE +       ID VIN+++ ++AL+
Sbjct:    4 VLMGLPGAGKGTQAERIVEDFGIPHISTGDMFRAAMKEETDLGLEAKSYIDKGELVPDEVTIGIVRERLGKNDCDG--GFLLDGFPRTVAQAEALEEILKGLGKSIDHVINIQVDKDALM 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROWI (Adenylate kinase 2, mitochondrial OS=Drosophila willistoni GN=Adk2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 48/120 (40.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + LG PG GKGT A  L     V H++TGD++R E++S   L ++L +++ +GKLVSDE+++N++   L+  E K   GF+LDGFPRTV QA+ L+ +     T++D V+   + +  L+
Sbjct:   22 ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDEGKLVSDELVVNMIDSNLDKPECKN--GFLLDGFPRTVVQAQKLDTLLDKRKTNLDAVVEFSIDDNLLV 139          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_THEYD3.955e-1941.67Adenylate kinase OS=Thermodesulfovibrio yellowston... [more]
KAD_SYNPX3.955e-1941.22Adenylate kinase OS=Synechococcus sp. (strain WH81... [more]
KAD_METAC3.955e-1940.32Adenylate kinase OS=Methanosarcina acetivorans GN=... [more]
KAD_GEOKA3.955e-1940.83Adenylate kinase OS=Geobacillus kaustophilus GN=ad... [more]
KAD_MOOTA4.283e-1941.67Adenylate kinase OS=Moorella thermoacetica (strain... [more]
KAD_SYNJB5.166e-1942.98Adenylate kinase OS=Synechococcus sp. GN=adk PE=3 ... [more]
KAD_STRM55.166e-1942.50Adenylate kinase OS=Stenotrophomonas maltophilia (... [more]
KAD_CELJU5.166e-1940.83Adenylate kinase OS=Cellvibrio japonicus (strain U... [more]
KAD_BACLD5.166e-1941.67Adenylate kinase OS=Bacillus licheniformis (strain... [more]
KAD2_DROWI5.166e-1940.00Adenylate kinase 2, mitochondrial OS=Drosophila wi... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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