FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SHESM (Adenylate kinase OS=Shewanella sp. (strain MR-4) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL--EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  +    G+P I+TGD++R  + +  PL  +  +++  G+LVSD++II L+ +R+   +     GF+LDGFPRT+ QA+ +   G++ ID VI + + +E ++   S
Sbjct:    4 ILLGAPGAGKGTQAQFIMEQYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGQLVSDDLIIGLVKERIAQDDC--VKGFLLDGFPRTIPQADAMAANGIS-IDHVIEIDVPDEEIVKRMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SHESA (Adenylate kinase OS=Shewanella sp. (strain ANA-3) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL--EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  +    G+P I+TGD++R  + +  PL  +  +++  G+LVSD++II L+ +R+   +     GF+LDGFPRT+ QA+ +   G++ ID VI + + +E ++   S
Sbjct:    4 ILLGAPGAGKGTQAQFIMEQYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGQLVSDDLIIGLVKERIAQDDC--VKGFLLDGFPRTIPQADAMAANGIS-IDHVIEIDVPDEEIVKRMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SHEPW (Adenylate kinase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALL 658
            + LG PG GKGT A  +    G+P I+TGD++R  + +  PL  +  +++  G+LVSDE+II L+ +R+   +     GF+LDGFPRT+ QA+ +  G   ID V+ + + +E ++
Sbjct:    4 MLLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGQLVSDELIIGLVKERVAQDDC--AKGFLLDGFPRTIPQADAMAAGGIAIDHVVEIDVPDEEIV 117          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSYIN (Adenylate kinase OS=Psychromonas ingrahamii (strain 37) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE--GVTDIDLVINLKLREEALL 658
            + LG PG GKGT A  + +  G+P I+TGD++R    +   L  +  E++  G+LVSDE+II+L+ +R+ A +     GF+LDGFPRT+ QA+ ++  GV  +D V+   + +E ++
Sbjct:    4 ILLGAPGAGKGTQAQFMMDKYGIPQISTGDMLRAAAKAGTELGLKAKELMDAGQLVSDELIIDLVKERISAEDC--AKGFLLDGFPRTIPQADAMKTAGVA-VDFVLEFDVPDEEIV 117          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSEMY (Adenylate kinase OS=Pseudomonas mendocina (strain ymp) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE--GVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  ++   G+P I+TGD++R  + +   L  +   ++  G LVSD++IINL+ +R+   +     GF+ DGFPRT+ QAE L   GVT +D V+ + + +E ++   S
Sbjct:    4 ILLGAPGAGKGTQARYITEKFGIPQISTGDMLRAAVKAGTELGLKAKSVMDAGGLVSDDLIINLVKERIAQPDCAN--GFLFDGFPRTIPQAEALRDAGVT-LDHVVEIAVDDEEIVKRLS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_METTP (Adenylate kinase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANASEEDM 682
            V LG PG GKGT A  ++    V HI+TGD++R+ + +   L  +  + +  G+LV D I+I ++  RL   +  G  G++LDG+PRT+ QAE L+ +       ID+V+N+ + +E L+   S   M
Sbjct:    4 VLLGPPGSGKGTQAKMIAEKFNVKHISTGDILREHVRNGTELGKEAKKYMDAGQLVPDSILIGIIKDRLSKPDVAG--GYMLDGYPRTIPQAEALDKILPELKQKIDVVLNIDVPDEELVRRLSGRRM 129          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_METPB (Adenylate kinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANASE 673
            + LG PG GKGT + R+     VP ++TGD++R  +A+  P+  +   I+  G LV D +++ +++ R+E  EA    GFILDGFPRTV QA+ L+ +       +D V+   + E AL+   ++
Sbjct:    4 ILLGPPGAGKGTQSERIVERYRVPQLSTGDMLRAAVAAGTPVGLEAKSIMESGGLVPDAVVVGIVADRIE--EADARDGFILDGFPRTVEQAKALDAMLAEKGIALDAVVEFVVDENALVGRIAK 126          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_MANSM (Adenylate kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  + N  G+P I+TGD+ R  + +   L  Q   ++ +GKLV DE+ + L+  R+   +     GF+LDGFPRT+ QA+ L +   +ID V+   + +E ++   S
Sbjct:    8 ILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKAGTELGKQAKALMDEGKLVPDELTVALVKDRIAQPDCAN--GFLLDGFPRTIPQADALKDSGVNIDYVLEFDVPDEVIVERMS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_LEPIN (Adenylate kinase OS=Leptospira interrogans GN=adk PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            +F+G PG GKGT A  L   L +P I+TGD++R+ + +   +  +    +  G LV D ++I ++  R+   + K   GF+LDGFPRTV QAE L+ +       ID  INL++ +  LL
Sbjct:    5 IFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN--GFLLDGFPRTVEQAEALDTLLKNEGKSIDKAINLQVPDAELL 122          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_LEPIC (Adenylate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            +F+G PG GKGT A  L   L +P I+TGD++R+ + +   +  +    +  G LV D ++I ++  R+   + K   GF+LDGFPRTV QAE L+ +       ID  INL++ +  LL
Sbjct:    5 IFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN--GFLLDGFPRTVEQAEALDTLLKNEGKSIDKAINLQVPDAELL 122          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_SHESM2.399e-1637.19Adenylate kinase OS=Shewanella sp. (strain MR-4) G... [more]
KAD_SHESA2.399e-1637.19Adenylate kinase OS=Shewanella sp. (strain ANA-3) ... [more]
KAD_SHEPW2.399e-1637.93Adenylate kinase OS=Shewanella piezotolerans (stra... [more]
KAD_PSYIN2.399e-1638.46Adenylate kinase OS=Psychromonas ingrahamii (strai... [more]
KAD_PSEMY2.399e-1638.02Adenylate kinase OS=Pseudomonas mendocina (strain ... [more]
KAD_METTP2.399e-1635.94Adenylate kinase OS=Methanosaeta thermophila (stra... [more]
KAD_METPB2.399e-1636.00Adenylate kinase OS=Methylobacterium populi (strai... [more]
KAD_MANSM2.399e-1636.67Adenylate kinase OS=Mannheimia succiniciproducens ... [more]
KAD_LEPIN2.399e-1637.50Adenylate kinase OS=Leptospira interrogans GN=adk ... [more]
KAD_LEPIC2.399e-1637.50Adenylate kinase OS=Leptospira interrogans serogro... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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