FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PARD8 (Adenylate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALLANASE 673
            V  G PG GKGT +  +    G+ HI+TGD++R E+ +   L     + + +G+LV DE+I+++L+  L++   K   G I DGFPRT+ QA+ L     E  TD+ +++NL++ EE L+    E
Sbjct:    5 VIFGAPGSGKGTQSELIIKEYGLDHISTGDVLRGEMKAETELGKIAKDYIEKGQLVPDELIVDMLANVLDS--KKPAKGVIFDGFPRTIPQAKALKKMLNERGTDVSVMLNLQVEEEELIKRLLE 127          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_LACF3 (Adenylate kinase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            V +G PG GKGT A  +     +PHI+TGD+ R  + +  P+  +  + + +G+LV DE+   ++ +RL   + K   GF+LDGFPR + QA+ L  +       +D VIN+ +R E L+   S
Sbjct:    4 VLMGLPGAGKGTQAQLIVKDFDIPHISTGDIFRAAIKNQTPMGVEAKKFIDKGELVPDEVTNGIVQERLAQDDTKD--GFMLDGFPRNLAQADALNAMLVDSDRQLDAVINIHVRPEVLVERLS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_HAEDU (Adenylate kinase OS=Haemophilus ducreyi GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  + +  G+P I+TGD+ R  +     L  Q   ++ QGKLV D++ + L+  R+   +     GF+LDGFPRT+ QA+ L+     IDLV+   + +E ++   S
Sbjct:    4 ILLGAPGAGKGTQAQFIMHKFGIPQISTGDMFRAAIKEGTELGKQAKALMDQGKLVPDDLTVALVKDRIAQPDC--AHGFLLDGFPRTIPQADALKDAGVKIDLVLEFDVADEVIVERMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_FRATF (Adenylate kinase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALL 658
            + LG PG GKGT A  +     + HI+TGD++R+ + S   L  +L +++  G+LVSDE II ++  R+   +     GF+LDG PRT+ QA+ L+ +  +ID ++ + + +  L+
Sbjct:    4 ILLGAPGAGKGTQAKIIEQKYNIAHISTGDMIRETIKSGLVLGQELKKVLDAGELVSDEFIIKIVKDRISKNDCNN--GFLLDGVPRTIPQAQELDKLGVNIDYIVEVDVADNLLI 117          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BORPD (Adenylate kinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A+ ++    +P I+TGD++R  +    PL  +  +++  G LVSDEIII L+  RL+  +     G++ DGFPRT+ QA+ L+     +D V+ +++ E+ ++   S
Sbjct:    4 ILLGPPGAGKGTQAAFVTQHFAIPQISTGDMLRAAVKQGTPLGQEAKKVMDAGGLVSDEIIIGLVQDRLKQPDCAN--GYLFDGFPRTIPQADALKSAGVALDYVVEIEVPEDDIIERMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BARQU (Adenylate kinase OS=Bartonella quintana GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            VFLG PG GKGT A  L+    +P ++TGD++R+ ++    +  +   I++ G LVSD I+  ++S R+   +     GF+LDG+PRTV QAE+L+ +       +D VI L + E AL+
Sbjct:    4 VFLGPPGSGKGTQARMLTEEYRIPQLSTGDMLREVISRETEVGRKAKAIINAGALVSDSIVNQIVSNRINESDCIN--GFVLDGYPRTVGQAEVLQQILQSKNMQLDAVIELIVDENALI 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_ANADF (Adenylate kinase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  L+   GVPHI+TGD+ RD  A    L   +  I+  G LV+D+I   ++  RL   +     GFILDG+PRT  QAE L+G+       I  V++ ++ EEA++   S
Sbjct:    4 ILLGPPGAGKGTQAKLLAAEYGVPHISTGDMFRDHKARGTELGKTVQAIMDAGGLVTDDITNEMVKDRLSRPDV--AKGFILDGYPRTSAQAEYLDGLLASAGRAISRVLSYEVAEEAVVERIS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SYNS3 (Adenylate kinase OS=Synechococcus sp. (strain CC9311) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 48/131 (36.64%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLRE----EALLANASEED 679
            +FLG PG GKGT A+ L +  G+ H++TGDL+R E+++   L  + + ++++G+LVSD +++ ++  +L  G   G+ G++LDGFPR V QAE L+ +       I+ V+ L+L +    E LL+   ++D
Sbjct:    6 LFLGPPGAGKGTQAALLCDRHGLRHLSTGDLLRAEVSAGSALGQEAESVMNRGELVSDSLVLAIVKAQL--GALNGQ-GWLLDGFPRNVAQAEALDPLLQELNQPIEAVVLLELDDAVLIERLLSRGRDDD 133          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_RHOE4 (Adenylate kinase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLRE----EALLANASEED 679
            V LG PG GKGT A+ LS   GVPHI+TGDL R  +  +  L  +  + +  G+LV   I  +++  R+   +A    GF+LDGFPR+V QA+ LEG+     T +D V++  + E    E +LA    +D
Sbjct:    4 VLLGPPGAGKGTQAAILSEKFGVPHISTGDLFRANIGQATALGVEAKKYIDAGELVPSSITNDMVKARVAEPDAAN--GFLLDGFPRSVEQAQALEGILKDLDTRLDGVLSFVVDEDIVVERMLARGRADD 132          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PROMH (Adenylate kinase OS=Proteus mirabilis (strain HI4320) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 40/116 (34.48%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALL 658
            + LG PG GKGT A  +    G+P I+TGD++R  +++   L  +   ++  G+LV+DE++I L+ +R++  + +   GF+LDGFPRT+ QA+ + E   ++D V+   + +E ++
Sbjct:    4 ILLGAPGAGKGTQAQFIKENYGIPQISTGDMLRAAVSAGTELGLKAKALMDNGQLVTDELVIALVKERIKQDDCRN--GFLLDGFPRTIPQADAMKEAGINVDFVLEFAVPDEIIV 117          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_PARD85.346e-1636.80Adenylate kinase OS=Parabacteroides distasonis (st... [more]
KAD_LACF35.346e-1635.48Adenylate kinase OS=Lactobacillus fermentum (strai... [more]
KAD_HAEDU5.346e-1636.67Adenylate kinase OS=Haemophilus ducreyi GN=adk PE=... [more]
KAD_FRATF5.346e-1635.34Adenylate kinase OS=Francisella tularensis subsp. ... [more]
KAD_BORPD5.346e-1635.83Adenylate kinase OS=Bordetella petrii (strain ATCC... [more]
KAD_BARQU5.346e-1638.33Adenylate kinase OS=Bartonella quintana GN=adk PE=... [more]
KAD_ANADF5.346e-1640.32Adenylate kinase OS=Anaeromyxobacter sp. (strain F... [more]
KAD_SYNS36.981e-1636.64Adenylate kinase OS=Synechococcus sp. (strain CC93... [more]
KAD_RHOE46.981e-1638.93Adenylate kinase OS=Rhodococcus erythropolis (stra... [more]
KAD_PROMH6.981e-1634.48Adenylate kinase OS=Proteus mirabilis (strain HI43... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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