FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PARL1 (Adenylate kinase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + LG PG GKGT A RL    G+  ++TGD++R  +A    +    + I+++G+LV D++++ +++ R+E  +A    G+ILDGFPR V QAE L+ +     T +D V+ L + +  LL
Sbjct:    4 ILLGPPGAGKGTQAKRLEEAHGLVQLSTGDMLRAAVAQGSEVGKVAEGIMARGELVPDDVVVGIIADRIEQPDAVN--GYILDGFPRNVAQAEALDKMLAGKGTTLDAVVELGVDDSILL 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_MYCS2 (Adenylate kinase OS=Mycobacterium smegmatis GN=adk PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A +LS  LG+P I+TGDL R  +    PL  +    +  G LV  E+   L+  R++  +A    GFILDG+PR+V QA  L+ +     T +D V+  ++ E+ LL
Sbjct:    4 VLLGPPGAGKGTQAEKLSEKLGIPQISTGDLFRKNIGDGTPLGLEAKRYLDAGDLVPAELTNRLVEDRIDQPDA--AEGFILDGYPRSVEQAGALKDMLAARNTKLDAVLEFQVSEDELL 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_LEPCP (Adenylate kinase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A+ +    G+P I+TGD++R  + +   +     +++  G LVSD+III L+ +R+   +     GF+ DGFPRT+ QAE ++     +DLV+ + +  EA++   S
Sbjct:    4 ILLGAPGAGKGTQAAFICRKYGIPQISTGDMLRAAVKAGTEMGLAAKKVMDAGGLVSDDIIIGLVKERILQDDCAN--GFLFDGFPRTIPQAEAMKAAGVKLDLVLEIDVPSEAIIERMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_HYPNA (Adenylate kinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLANASE 673
            +  G P  GKGT A RL    G   ++TGD++R   AS   L  ++ +I+ +G LVSDEI+I L+ ++L      G  GFI DGFPRT+ QAE L+ + +     +DLVI + + +  LL   ++
Sbjct:    4 ILFGPPAAGKGTQAKRLVEQRGFVQLSTGDMLRAARASGSELGQRVAKIMDEGGLVSDEIVIALIEEQLTV--QAGAPGFIFDGFPRTIGQAEALDSLLESRESKVDLVIRMIVDDTRLLERVTK 126          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_GLOVI (Adenylate kinase OS=Gloeobacter violaceus GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV 607
            + LG PG GKGT A  L   LG+P ++TGD++R  +    PL  +    +++G LV D +++ L+  RL   +A G  G+ILDGFPRT  QAE L+G+
Sbjct:    7 MLLGAPGAGKGTQAQLLMQELGLPQVSTGDILRAAVKEGTPLGLEAQSYMNRGALVPDAVVVGLIEDRLARPDAGG--GWILDGFPRTPAQAEALDGL 102          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CHLT3 (Adenylate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLANAS 670
            +  G PGVGKGT A  LS    + HI+TGD++R  +     L  +    + +G+LV D++II ++ + +   E + E GFILDGFPRTV QAE L+ +       ID VI+L    E ++A  S
Sbjct:    4 ILFGPPGVGKGTQAKILSEKHQLAHISTGDMLRSAIKQGTELGLKAKSFIDKGELVPDDVIIGMIEEYVSVQENR-EQGFILDGFPRTVPQAEALDRLLQKYEIPIDCVISLTADAEEIVARLS 126          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CHLPD (Adenylate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 44/120 (36.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-IDLVINLKLREEALLANAS 670
            + LG PG GKGT AS +   L +P I+TGD++R  + +  P+  +  +++  GKLVSDEII+ L+ +RL + +     G + DGFPRT+ QAE L+  +  +D V+ + + ++ ++   S
Sbjct:    4 ILLGAPGAGKGTQASYICKTLNIPQISTGDMLRAAVQAQTPVGIEAKKVMDAGKLVSDEIILALVKERLASQDCIN--GCLFDGFPRTIAQAESLKNDSILLDYVMEIHVDDKEIIERMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CHLL2 (Adenylate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=adk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 45/121 (37.19%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL--EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  +S  L +P I+TGD++R  + +  P+  +  +++  G+LVSD+II+ L+ +RL+  +     G + DGFPRT+ QAE L  +GV  ID V+ + + +  ++   S
Sbjct:    4 ILLGAPGAGKGTQAHYISKALDIPQISTGDMLRAAVKAETPVGLEAKKVMDAGQLVSDDIILALVKERLKNADCSN--GCLFDGFPRTLAQAEALKKDGV-GIDHVVEIDVADSEIITRMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD1_CHAGB (Adenylate kinase 1 OS=Chaetomium globosum GN=ADK1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAG-EAKGEAGFILDGFPRTVRQAE-----ILEGVTDIDLVINLKLREEALLA 661
            ++ + +G PG GKGT A ++       H+ATGD++R ++A    L  +  +I+  G LVSD+I+I ++ + L+   E KG  GFILDGFPRTV QAE     + E    +   + LK+ ++ L++
Sbjct:   41 IRMILIGPPGAGKGTQAPKIKEKFNCCHLATGDMLRSQVAKKTTLGREAKKIMDAGGLVSDDIVIGMIKEELDNNKECKG--GFILDGFPRTVPQAEGLDKMLRERSQSLQHAVELKIDDQLLVS 163          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACWK (Adenylate kinase OS=Bacillus weihenstephanensis (strain KBAB4) GN=adk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.666e-16
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   L  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETELGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--IKGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121          

HSP 2 Score: 22.3274 bits (46), Expect = 8.666e-16
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_PARL16.981e-1636.67Adenylate kinase OS=Parvibaculum lavamentivorans (... [more]
KAD_MYCS26.981e-1640.00Adenylate kinase OS=Mycobacterium smegmatis GN=adk... [more]
KAD_LEPCP6.981e-1635.83Adenylate kinase OS=Leptothrix cholodnii (strain A... [more]
KAD_HYPNA6.981e-1638.40Adenylate kinase OS=Hyphomonas neptunium (strain A... [more]
KAD_GLOVI6.981e-1642.86Adenylate kinase OS=Gloeobacter violaceus GN=adk P... [more]
KAD_CHLT36.981e-1639.52Adenylate kinase OS=Chloroherpeton thalassium (str... [more]
KAD_CHLPD6.981e-1636.67Adenylate kinase OS=Chlorobium phaeobacteroides (s... [more]
KAD_CHLL26.981e-1637.19Adenylate kinase OS=Chlorobium limicola (strain DS... [more]
KAD1_CHAGB6.981e-1636.80Adenylate kinase 1 OS=Chaetomium globosum GN=ADK1 ... [more]
KAD_BACWK8.666e-1637.50Adenylate kinase OS=Bacillus weihenstephanensis (s... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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