FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACCR (Adenylate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=adk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.666e-16
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQDDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121          

HSP 2 Score: 22.3274 bits (46), Expect = 8.666e-16
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACC4 (Adenylate kinase OS=Bacillus cereus (strain B4264) GN=adk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.666e-16
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQDDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121          

HSP 2 Score: 22.3274 bits (46), Expect = 8.666e-16
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_UNCTG (Adenylate kinase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 47/124 (37.90%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLANASEE 676
            + ++ LG PG GKGT A +++   G+ H++TGD+ R+   S   +S    +++S G+LV DEI++N++ KRLE    K   GF+LDGFPRTV+Q   L+ +    +  N+K+    L++   EE
Sbjct:    1 MNYIILGPPGAGKGTQAKKIAVKFGILHLSTGDMFREAKKSDESIS----KLLSSGQLVPDEIVVNMVRKRLEKNNIK--KGFLLDGFPRTVKQTGELDRML---MSENIKIDSVFLISVPFEE 115          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_THETN (Adenylate kinase OS=Thermoanaerobacter tengcongensis GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            V LG PG GKGT A +++    +PHI+TGD+ R  L  +  L     E + +G LV DE+   ++  RLE  + K   GF+LDG+PR + QAE L+   +     +  VIN+++  EAL+
Sbjct:    4 VLLGPPGAGKGTQALKIAKEFDIPHISTGDIFRQNLRDNTELGKLAKEYMDKGLLVPDEVTNRIVEDRLEKEDCK--KGFLLDGYPRNIPQAEELDKFLEERGHSLTAVINIQVEREALI 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SALTO (Adenylate kinase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            V +G PG GKGT A  ++  L VP I+TGD+ R  ++   PL  Q    +  G+LV DE+ IN++  RL   +A GE GF+LDGFPRT  QA  L+ +     T +DLV+ L + ++ ++   S
Sbjct:    4 VLVGPPGAGKGTQAEFVAAHLAVPKISTGDIFRSNVSQGTPLGVQAKRYMDAGELVPDEVTINMVRDRLAEPDA-GE-GFLLDGFPRTTPQAAALDKLLVDLGTALDLVLELVVDDDEVIRRLS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SALAI (Adenylate kinase OS=Salinispora arenicola (strain CNS-205) GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            V +G PG GKGT A  ++  L VP I+TGD+ R  ++   PL  Q    +  G+LV DE+ IN++  RL   E     GF+LDGFPRT  QA  L+ +     T +DLV+ L + ++ ++   S
Sbjct:    4 VLVGPPGAGKGTQAEFVAAHLAVPKISTGDIFRSNVSQGTPLGVQAKRYMDAGELVPDEVTINMVRDRL--AEPDASEGFLLDGFPRTTPQAAALDKLLVDLGTALDLVLELVVDDDEVIRRLS 125          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PHOPR (Adenylate kinase OS=Photobacterium profundum GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-TDIDLVINLKLREEALL 658
            + LG PG GKGT A  +    G+P I+TGD++R  + +   L  Q   ++  G+LVSD+II+ L+ +R+   +     GF+LDGFPRT+ QA+ L+ V   +D VI   + +  ++
Sbjct:    4 ILLGAPGAGKGTQAQFIMAKFGIPQISTGDMLRAAIKAGTELGKQAKSVIDAGQLVSDDIILGLVKERIAQDDC--AKGFLLDGFPRTIPQADGLKEVGVVVDYVIEFDVADSVIV 117          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PETMO (Adenylate kinase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVT-----DIDLVINLKLREEALLANAS 670
            +F G PG GKGT A +++    + HI+TGD++RD ++    L      I+ +G+LVSDEI+ +L+ +RLE  ++     FILDG+PRT+ QA+ L+  T     +ID  + + + EE ++   S
Sbjct:    4 LFFGPPGAGKGTQAKKVAQEFQIVHISTGDILRDAVSKGTELGKMAKAIMDRGELVSDEIMNSLVKERLEELDS-----FILDGYPRTLDQAKFLDQATKELQKEIDAAVLIDVSEEEIVKRIS 122          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_METFK (Adenylate kinase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=adk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A+ +     +P I+TGD++R  + +   L  +    +  G LV D++II L+ +R++  +A  + GF+ DGFPRT+ QAE + +   DID V+ + + +E ++   S
Sbjct:    4 ILLGAPGAGKGTQATFIKEAFDIPQISTGDMLRAAVKAGTQLGLEAKRYMDSGGLVPDDVIIGLVKERIK--DADCQQGFLFDGFPRTIPQAEAMKQAGVDIDYVVEIDVPDEEIIKRMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_GIALA (Adenylate kinase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDI--DLVINLKLREEALL 658
            V LG PG GKGT A  L +   + HI+ G+L+R+E+  + P+++Q+ + VS+G+LV D I+I L+   +      G++ ++LDGFPR+  QA  L    D+    ++ LK+ +EA++
Sbjct:   31 VLLGAPGAGKGTQAKHLVSKYSLKHISPGNLLREEMNRNSPITAQIKDYVSKGQLVPDSIVIKLIENHI---ATIGDSNWLLDGFPRSESQAAALRASPDLFPTHIVELKVDQEAVV 144          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BACCR8.666e-1636.67Adenylate kinase OS=Bacillus cereus (strain ATCC 1... [more]
KAD_BACC48.666e-1636.67Adenylate kinase OS=Bacillus cereus (strain B4264)... [more]
KAD_UNCTG9.118e-1637.90Adenylate kinase OS=Uncultured termite group 1 bac... [more]
KAD_THETN9.118e-1638.33Adenylate kinase OS=Thermoanaerobacter tengcongens... [more]
KAD_SALTO9.118e-1640.32Adenylate kinase OS=Salinispora tropica (strain AT... [more]
KAD_SALAI9.118e-1638.71Adenylate kinase OS=Salinispora arenicola (strain ... [more]
KAD_PHOPR9.118e-1637.07Adenylate kinase OS=Photobacterium profundum GN=ad... [more]
KAD_PETMO9.118e-1637.10Adenylate kinase OS=Petrotoga mobilis (strain DSM ... [more]
KAD_METFK9.118e-1635.00Adenylate kinase OS=Methylobacillus flagellatus (s... [more]
KAD_GIALA9.118e-1636.75Adenylate kinase OS=Giardia lamblia PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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