FC875392 | Citrus Genome Database

Overview


Name	FC875392
Unique Name	FC875392
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	721

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC875392_ssr35	microsatellite	FC875392_ssr35:35..52.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55	microsatellite	FC875392_ssr55:55..68.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253	microsatellite	FC875392_ssr253:253..264.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218	contig	Ccv1_Contig13218:52..775.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACC1 (Adenylate kinase OS=Bacillus cereus (strain ATCC 10987) GN=adk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.126e-15
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121

HSP 2 Score: 22.3274 bits (46), Expect = 1.126e-15
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACC0 (Adenylate kinase OS=Bacillus cereus (strain AH820) GN=adk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.126e-15
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121

HSP 2 Score: 22.3274 bits (46), Expect = 1.126e-15
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACAN (Adenylate kinase OS=Bacillus anthracis GN=adk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.126e-15
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121

HSP 2 Score: 22.3274 bits (46), Expect = 1.126e-15
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACAH (Adenylate kinase OS=Bacillus thuringiensis (strain Al Hakam) GN=adk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.126e-15
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121

HSP 2 Score: 22.3274 bits (46), Expect = 1.126e-15
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACAC (Adenylate kinase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=adk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.126e-15
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121

HSP 2 Score: 22.3274 bits (46), Expect = 1.126e-15
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_BACAA (Adenylate kinase OS=Bacillus anthracis (strain A0248) GN=adk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.126e-15
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + +G PG GKGT A ++     +PHI+TGD+ R  + +   +  Q    + +G LV DE+ I ++ +RL   +     GF+LDGFPRTV QA  LE +       ID V+N+ +    LL
Sbjct:    4 ILMGLPGAGKGTQAEQIVAKYNIPHISTGDMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLSQEDC--VRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLL 121

HSP 2 Score: 22.3274 bits (46), Expect = 1.126e-15
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  672 KKICSECGGNYNV 710
            ++IC ECG  Y++
Sbjct:  127 RRICKECGATYHL 139

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_STRSV (Adenylate kinase OS=Streptococcus sanguinis (strain SK36) GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 45/124 (36.29%), Postives = 75/124 (60.48%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDL----VINLKLREEALLANAS 670
            + +G PG GKGT A+++ +   V HI+TGD+ R  +A+   +       + +G+LV DE+   ++ +RL   + K E GF+LDG+PRT+ QA  L + +T++DL    VIN+++   +LL   S
Sbjct:    4 LIMGLPGAGKGTQAAKIVDHFNVAHISTGDMFRAAIANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQNDIK-ETGFLLDGYPRTIEQAHALDQTLTELDLALDGVINIEVDPNSLLERLS 126

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SPHAL (Adenylate kinase OS=Sphingopyxis alaskensis GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            + LG PG GKGT ASRL +  G+  ++TGD++R  + +  P+  Q   ++  G+LVSD I+  L+ +RL+  E   +   I DG+PRT  QA+ L+G+       +D VI L + E+AL+
Sbjct:    6 ILLGPPGAGKGTQASRLEDEHGMVQLSTGDMLRAAVKAGTPIGLQAKAVMDAGELVSDAIVSGLIGERLD--ELGPDVSVIFDGYPRTAAQADALDGILSARGRTLDHVIELVVDEDALV 123

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PROM3 (Adenylate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 45/120 (37.50%), Postives = 75/120 (62.50%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            +FLG PG GKGT A RL     + H++TGDL+R E+ +  PL  +   ++++G+LVSDE+++ ++  +L+        G++LDGFPRT+ QA  LE + +     I+ V+ L+L +  L+
Sbjct:    6 LFLGPPGAGKGTQAERLCAAHELMHLSTGDLLRAEVGAKTPLGQEAAAVMNRGELVSDELVLAIVENQLK----NQSGGWLLDGFPRTLIQATALEPLLEELKQPIEAVVLLELNDAVLI 121

BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_NOCFA (Adenylate kinase OS=Nocardia farcinica GN=adk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 2

Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLRE----EALLANASEED 679
            V LG PG GKGT A  LS  LGVPHI+TGDL R  ++   PL  +  + +  G LV  ++   ++  R+   +A    GF+LDG+PRTV QA+ LE +     + +D V+   + E    E +LA    +D
Sbjct:    4 VLLGPPGAGKGTQAVLLSEKLGVPHISTGDLFRANISQQTPLGREAQKYMDAGDLVPSDVTNRMVEARVNEPDAAN--GFVLDGYPRTVDQADALEKILGDMNSKLDAVLCFVVPEDTVVERMLARGRNDD 132

The following BLAST results are available for this feature:

BLAST of FC875392 vs. ExPASy Swiss-Prot

BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
KAD_BACC1	1.126e-15	36.67	Adenylate kinase OS=Bacillus cereus (strain ATCC 1...	[more]
KAD_BACC0	1.126e-15	36.67	Adenylate kinase OS=Bacillus cereus (strain AH820)...	[more]
KAD_BACAN	1.126e-15	36.67	Adenylate kinase OS=Bacillus anthracis GN=adk PE=3...	[more]
KAD_BACAH	1.126e-15	36.67	Adenylate kinase OS=Bacillus thuringiensis (strain...	[more]
KAD_BACAC	1.126e-15	36.67	Adenylate kinase OS=Bacillus anthracis (strain CDC...	[more]
KAD_BACAA	1.126e-15	36.67	Adenylate kinase OS=Bacillus anthracis (strain A02...	[more]
KAD_STRSV	1.191e-15	36.29	Adenylate kinase OS=Streptococcus sanguinis (strai...	[more]
KAD_SPHAL	1.191e-15	38.33	Adenylate kinase OS=Sphingopyxis alaskensis GN=adk...	[more]
KAD_PROM3	1.191e-15	37.50	Adenylate kinase OS=Prochlorococcus marinus (strai...	[more]
KAD_NOCFA	1.191e-15	38.17	Adenylate kinase OS=Nocardia farcinica GN=adk PE=3...	[more]

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Properties


Property Name	Value
Genbank description	C31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA