FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD1_PENMA (Adenylate kinase 1 OS=Penicillium marneffei GN=adk1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE 601
            + +G PG GKGT A RL     V H+ATGD++R ++A   PL  +  +I+ QG LVSDEI++N++   LE   ++ + GFILDGFPRTV QAE L+
Sbjct:   49 ILIGPPGAGKGTQAPRLKEKYCVCHLATGDMLRSQVAKKTPLGKEAKKIMDQGGLVSDEIMVNMIKSELET-NSECKNGFILDGFPRTVAQAERLD 143          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD1_BOTFB (Adenylate kinase 1 OS=Botryotinia fuckeliana (strain B05.10) GN=adk1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV 607
            V+ + +G PG GKGT A ++       H+ATGD++R ++A   PL  +  +I+ QG LVSDEI+I ++   LE G ++ + GFILDGFPRTV QAE L+ +
Sbjct:   45 VRMILMGPPGAGKGTQAPKIKEKFSCCHLATGDMLRSQVAKKTPLGREAKKIMDQGGLVSDEIVIGMIKAELE-GNSECKGGFILDGFPRTVVQAERLDAM 144          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_FERNB (Adenylate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=adk PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.593e-18
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            +FLG PG GKGTYA R+     +PHI+TGD+ R+ +A    L  ++ +IV+ G LV DE+   L+ +RL+  + K   GFILDG+PRT+ QA+ L  +      ++D  I  ++ EE ++   S
Sbjct:    4 IFLGPPGAGKGTYAKRVVEKYIIPHISTGDIFREAIAKGTELGRKVQDIVNSGNLVPDELTNALVEERLKQDDCK--KGFILDGYPRTLNQAQALNEMLKKMGKELDGAIYFEVDEETVVQRIS 125          

HSP 2 Score: 23.0978 bits (48), Expect = 1.593e-18
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            +++CS+CG  YNV
Sbjct:  127 RRVCSKCGKVYNV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOB8 (Adenylate kinase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=adk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.593e-18
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A  +SN   +PHI+TGD+ R  ++ + PL  +    +  G+LV DE+ IN++  RL+  + K   G++LDGFPRTV QA+ L          +D  + +K+  E +L
Sbjct:    4 VLLGPPGAGKGTQAKSISNKYSIPHISTGDIFRKNISENTPLGIEAKGYIDNGQLVPDEVTINMVKDRLQQDDCK--VGYLLDGFPRTVAQADALNNFLVDKNEQLDTALLIKVPNEFIL 121          

HSP 2 Score: 22.3274 bits (46), Expect = 1.593e-18
Identity = 6/17 (35.29%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  +++C  CG +Y+V
Sbjct:  123 RMTGRRVCPSCGASYHV 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_CLOTH (Adenylate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=adk PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.593e-18
Identity = 47/124 (37.90%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLANAS 670
            V LG PG GKGT A  +S    VPHI+TGD+ R  + +   L  +  E + +G LV DE+ ++++  R+   + K  AGFILDGFPRT+ QAE L+ +      ++D  +N+ + +E ++   S
Sbjct:    4 VLLGAPGAGKGTQAVVISQKYNVPHISTGDIFRSNIKNGTELGRKAKEYIDKGLLVPDELTVDIVKDRISQPDCK--AGFILDGFPRTIYQAERLDEILKELNVELDCALNIYVPDEEIIKRMS 125          

HSP 2 Score: 23.0978 bits (48), Expect = 1.593e-18
Identity = 6/17 (35.29%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  660 QMPRKKICSECGGNYNV 710
            +M  +++CS+CG +Y++
Sbjct:  123 RMSGRRVCSKCGMSYHI 139          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_TREPS (Adenylate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=adk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.595e-18
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLA 661
            +++VFLG PG GKGT A  +S   GV HI+TG ++R  +     L  ++ ++V  G LV D+ +  L+ +R+   +    +GFILDGFPRTV QA  LE +  ID  +++ + ++ L+A
Sbjct:    1 MRFVFLGPPGAGKGTLAGEISGRCGVVHISTGGILRAAIQKQTALGKKVQKVVEVGGLVDDQTVTELVRERVSHEDV--VSGFILDGFPRTVTQARCLEDIVPIDYAVSIVVPDDVLVA 117          

HSP 2 Score: 22.7126 bits (47), Expect = 1.595e-18
Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            +++CS CG +Y+V
Sbjct:  122 RRVCSACGSSYHV 134          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_TREPA (Adenylate kinase OS=Treponema pallidum GN=adk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.595e-18
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  305 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLA 661
            +++VFLG PG GKGT A  +S   GV HI+TG ++R  +     L  ++ ++V  G LV D+ +  L+ +R+   +    +GFILDGFPRTV QA  LE +  ID  +++ + ++ L+A
Sbjct:    1 MRFVFLGPPGAGKGTLAGEISGRCGVVHISTGGILRAAIQKQTALGKKVQKVVEVGGLVDDQTVTELVRERVSHEDV--VSGFILDGFPRTVTQARCLEDIVPIDYAVSIVVPDDVLVA 117          

HSP 2 Score: 22.7126 bits (47), Expect = 1.595e-18
Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  672 KKICSECGGNYNV 710
            +++CS CG +Y+V
Sbjct:  122 RRVCSACGSSYHV 134          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_XANP2 (Adenylate kinase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            V LG PG GKGT A RL    G+  ++TGD++R  +A+  P+  +   ++  G LVSDEI+I ++++RL++ +AK   GFILDGFPRTV QAE L+ +       +D VI L + +E L+
Sbjct:    4 VLLGPPGAGKGTQAQRLVARHGIVQLSTGDMLRAAVAAGTPVGLKAKAVMDAGGLVSDEIVIGIIAERLDSPDAKN--GFILDGFPRTVAQAEALDQLLASKGLKLDAVIELVVDQEKLV 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_VESOH (Adenylate kinase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A+ + N   +P I+TGD++R  +    PL  +  +I+  G LVSD IIINL+ +R++  + K   GF+ DGFPRT+ QAE L +    I+ VI +++ ++ ++A  S
Sbjct:    4 ILLGPPGAGKGTQATNICNKYSIPQISTGDMLRVAVKVGTPLGIEAKKIMDSGGLVSDNIIINLVKERIQHSDCKN--GFLFDGFPRTITQAEALRKDSVKINFVIEIQVPDQEIIARMS 121          
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_SYNJA (Adenylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLA 661
            +FLG PG GKGT A RL+ +   P I+TGDL+R E+ +  PL  Q    +  G+LV DE++I ++  +L+   A+   G+ILDGFPRT+ QAE LE +      D D V+NL++ ++ ++A
Sbjct:    5 IFLGPPGAGKGTQAERLAAIYHTPKISTGDLLRAEVKAQTPLGCQAKVYMDAGELVPDEVLIGMVKGQLQHSPAQ---GWILDGFPRTLAQAEALEELLRELGQDYDHVLNLEVPDDVVVA 122          
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD1_PENMA1.503e-1848.96Adenylate kinase 1 OS=Penicillium marneffei GN=adk... [more]
KAD1_BOTFB1.503e-1845.54Adenylate kinase 1 OS=Botryotinia fuckeliana (stra... [more]
KAD_FERNB1.593e-1839.52Adenylate kinase OS=Fervidobacterium nodosum (stra... [more]
KAD_CLOB81.593e-1839.17Adenylate kinase OS=Clostridium beijerinckii (stra... [more]
KAD_CLOTH1.593e-1837.90Adenylate kinase OS=Clostridium thermocellum (stra... [more]
KAD_TREPS1.595e-1838.66Adenylate kinase OS=Treponema pallidum subsp. pall... [more]
KAD_TREPA1.595e-1838.66Adenylate kinase OS=Treponema pallidum GN=adk PE=3... [more]
KAD_XANP21.963e-1843.33Adenylate kinase OS=Xanthobacter autotrophicus (st... [more]
KAD_VESOH1.963e-1840.00Adenylate kinase OS=Vesicomyosocius okutanii subsp... [more]
KAD_SYNJA1.963e-1842.15Adenylate kinase OS=Synechococcus sp. (strain JA-3... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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