FC875392

Overview
NameFC875392
Unique NameFC875392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875392_ssr35 microsatellite FC875392_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr55 microsatellite FC875392_ssr55:55..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875392_ssr253 microsatellite FC875392_ssr253:253..264. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13218 contig Ccv1_Contig13218:52..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSEAE (Adenylate kinase OS=Pseudomonas aeruginosa GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE--GVTDIDLVINLKLREEALLA 661
            + LG PG GKGT A  ++   G+P I+TGD++R  + +  PL  Q+  ++  G LVSD+III L+ +R+   EA    GF+ DGFPRT+ QAE L+  GVT ID V+ + + +E +++
Sbjct:    4 ILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERIT--EADCAKGFLFDGFPRTIPQAEALKDAGVT-IDHVVEIAVDDEEIVS 118
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSEAB (Adenylate kinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE--GVTDIDLVINLKLREEALLA 661
            + LG PG GKGT A  ++   G+P I+TGD++R  + +  PL  Q+  ++  G LVSD+III L+ +R+   EA    GF+ DGFPRT+ QAE L+  GVT ID V+ + + +E +++
Sbjct:    4 ILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERIT--EADCAKGFLFDGFPRTIPQAEALKDAGVT-IDHVVEIAVDDEEIVS 118
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSEA8 (Adenylate kinase OS=Pseudomonas aeruginosa (strain LESB58) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE--GVTDIDLVINLKLREEALLA 661
            + LG PG GKGT A  ++   G+P I+TGD++R  + +  PL  Q+  ++  G LVSD+III L+ +R+   EA    GF+ DGFPRT+ QAE L+  GVT ID V+ + + +E +++
Sbjct:    4 ILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERIT--EADCAKGFLFDGFPRTIPQAEALKDAGVT-IDHVVEIAVDDEEIVS 118
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_PSEA7 (Adenylate kinase OS=Pseudomonas aeruginosa (strain PA7) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILE--GVTDIDLVINLKLREEALLA 661
            + LG PG GKGT A  ++   G+P I+TGD++R  + +  PL  Q+  ++  G LVSD+III L+ +R+   EA    GF+ DGFPRT+ QAE L+  GVT ID V+ + + +E +++
Sbjct:    4 ILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERIT--EADCAKGFLFDGFPRTIPQAEALKDAGVT-IDHVVEIAVDDEEIVS 118
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_IDILO (Adenylate kinase OS=Idiomarina loihiensis GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-EGVTDIDLVINLKLREEALLANAS 670
            + LG PG GKGT A  L N  G+P I+TGD++R  + S   L  +  +++  G+LVSD+III L+ +R+   E   + GF+LDGFPRT+ QA+ + +   +ID V+   + +E ++   S
Sbjct:    4 ILLGAPGAGKGTQAQFLMNTFGIPQISTGDMLRSAIKSGSELGKKAKQVMDAGQLVSDDIIIELVKERI--AEPDCQNGFLLDGFPRTIPQADAMRDNGIEIDYVLEFDVPDEIIVDRMS 121
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD_AGRT5 (Adenylate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEIL-----EGVTDIDLVINLKLREEALL 658
            +FLG PG GKGT A RL++  G+P ++TGD++R  +++   +  +   ++  G LVSD+I+  ++S+R+EA +     GFILDG+PRTV QA+ L     +    +D VI LK+ EEAL+
Sbjct:    4 IFLGPPGAGKGTQAKRLTDKYGIPQLSTGDMLRAAVSAGTEIGKRAKAVMDAGGLVSDDIVNQIVSERIEAPDC--AKGFILDGYPRTVPQAKALADNMRKKNQVLDAVIELKVDEEALI 121
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROYA (Adenylate kinase 2, mitochondrial OS=Drosophila yakuba GN=Adk2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + LG PG GKGT A  L     V H++TGD++R E++S   L ++L +++  GKLVSDE++++++   L+  E K   GF+LDGFPRTV QAE L+ +     T++D VI   + +  L+
Sbjct:   22 ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKN--GFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLV 139
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROSI (Adenylate kinase 2, mitochondrial OS=Drosophila simulans GN=Adk2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + LG PG GKGT A  L     V H++TGD++R E++S   L ++L +++  GKLVSDE++++++   L+  E K   GF+LDGFPRTV QAE L+ +     T++D VI   + +  L+
Sbjct:   22 ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKN--GFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLV 139
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROSE (Adenylate kinase 2, mitochondrial OS=Drosophila sechellia GN=Adk2-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALL 658
            + LG PG GKGT A  L     V H++TGD++R E++S   L ++L +++  GKLVSDE++++++   L+  E K   GF+LDGFPRTV QAE L+ +     T++D VI   + +  L+
Sbjct:   22 ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKN--GFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLV 139
[Close]
BLAST of FC875392 vs. ExPASy Swiss-Prot
Match: KAD2_DROPS (Adenylate kinase 2, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=Adk2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:  314 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALL 658
            + LG PG GKGT A  L     V H++TGD++R E++S   L ++L +++  GKLVSDE++++++   L+  E K   GF+LDGFPRTV QAE L+ + D     +D VI   + +  L+
Sbjct:   22 ILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEISSGSKLGTELKKVMDAGKLVSDELVVDMIDSNLDKPECKN--GFLLDGFPRTVVQAEKLDSLLDKRKANLDAVIEFAIDDSLLV 139
The following BLAST results are available for this feature:
BLAST of FC875392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_PSEAE1.963e-1842.37Adenylate kinase OS=Pseudomonas aeruginosa GN=adk ... [more]
KAD_PSEAB1.963e-1842.37Adenylate kinase OS=Pseudomonas aeruginosa (strain... [more]
KAD_PSEA81.963e-1842.37Adenylate kinase OS=Pseudomonas aeruginosa (strain... [more]
KAD_PSEA71.963e-1842.37Adenylate kinase OS=Pseudomonas aeruginosa (strain... [more]
KAD_IDILO1.963e-1839.17Adenylate kinase OS=Idiomarina loihiensis GN=adk P... [more]
KAD_AGRT51.963e-1841.67Adenylate kinase OS=Agrobacterium tumefaciens (str... [more]
KAD2_DROYA1.963e-1840.83Adenylate kinase 2, mitochondrial OS=Drosophila ya... [more]
KAD2_DROSI1.963e-1840.83Adenylate kinase 2, mitochondrial OS=Drosophila si... [more]
KAD2_DROSE1.963e-1840.83Adenylate kinase 2, mitochondrial OS=Drosophila se... [more]
KAD2_DROPS1.963e-1840.83Adenylate kinase 2, mitochondrial OS=Drosophila ps... [more]

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Properties
Property NameValue
Genbank descriptionC31403D09EF CTVClemen1 Citrus clementina cDNA clone C31403D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875392 ID=FC875392; Name=FC875392; organism=Citrus clementina; type=EST; length=721bp
GGGGTCAAGAAGAGACCCATTCAAATCACCGCCATCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTCGGTATTAAGC
CGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGACGACAACGACGACGTC
TTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCAACTTCTTGTGAAA
ATACCGGAATCGACCCCAAAGCAAAAGCAGGAGCAGCGGCGGCGCTGCCG
CTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGAAGGGCGAGGGCAA
ACATGTCCAGTGGGTTTTTCTGGGCTGCCCAGGCGTGGGCAAAGGTACTT
ATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCACATCGCCACCGGT
GATCTCGTTCGCGACGAGCTCGCTTCCTCGGGCCCACTCTCCTCTCAGCT
CGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGATGAAATTATAATAA
ATTTATTGTCCAAGCGTCTTGAAGCTGGAGAAGCTAAGGGTGAAGCTGGG
TTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGGCGGAAATATTGGA
GGGAGTGACTGACATTGACTTGGTGATTAACCTAAAGCTTCGAGAGGAGG
CATTGCTTGCAAATGCCTCGGAAGAAGATATGTAGTGAATGTGGAGGAAA
CTACAACGTTGCCTGTATTGA
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