FC875393

Overview
NameFC875393
Unique NameFC875393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:144..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Homo sapiens GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_BOVIN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Bos taurus GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_RABIT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryctolagus cuniculus GN=PPP2R2A PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 147/225 (65.33%), Postives = 185/225 (82.22%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F
Sbjct:  146 PTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_PIG (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (Fragment) OS=Sus scrofa GN=PPP2R2A PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 147/225 (65.33%), Postives = 185/225 (82.22%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F
Sbjct:  125 PTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 348
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Mus musculus GN=Ppp2r2a PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 147/225 (65.33%), Postives = 185/225 (82.22%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F
Sbjct:  146 PTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_MACFA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Macaca fascicularis GN=PPP2R2A PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 147/225 (65.33%), Postives = 185/225 (82.22%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F
Sbjct:  146 PTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Homo sapiens GN=PPP2R2A PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 147/225 (65.33%), Postives = 185/225 (82.22%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F
Sbjct:  146 PTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Rattus norvegicus GN=Ppp2r2b PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.757e-83
Identity = 145/225 (64.44%), Postives = 183/225 (81.33%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T K+WD+NM++ PV T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Rattus norvegicus GN=Ppp2r2a PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.757e-83
Identity = 147/225 (65.33%), Postives = 185/225 (82.22%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+PV     +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G    V TGSY+N FR+F
Sbjct:  146 PTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369
[Close]
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABD_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.294e-83
Identity = 144/225 (64.00%), Postives = 186/225 (82.67%), Query Frame = 3 
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T QVHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+F
Sbjct:  152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF 375
The following BLAST results are available for this feature:
BLAST of FC875393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABB_HUMAN1.345e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_BOVIN1.345e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_RABIT1.345e-8365.33Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_PIG1.345e-8365.33Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_MOUSE1.345e-8365.33Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_MACFA1.345e-8365.33Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_HUMAN1.345e-8365.33Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_RAT1.757e-8364.44Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_RAT1.757e-8365.33Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABD_HUMAN2.294e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC31403D10EF CTVClemen1 Citrus clementina cDNA clone C31403D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875393 ID=FC875393; Name=FC875393; organism=Citrus clementina; type=EST; length=725bp
GAGAGAGAAACTTTGGATGTGCAAGCAATGACTCGTCCTTCCCCCCGGGT
GGTGTTTCATCTCTACGTTTGCCTGTGGTAGTTACCAGTCAGGAGACAAA
TCTTGTTGCTGGATGTCGAAGAATATATGCACATGCACATGATTATCATA
TTAACTCGATTTCAAATAACAGTGATGGTGAGACCTTTATATCGGCCGAT
GACCTGCGAATAAATCTCTGGAATTTGGAAATTAGCAATCAGAGTTTTAA
TATCGTAGATGTGAAACCTGCAAACATGGAGGATCTTACTGAGGTGATTA
CTTCCGCAGAATTTCACCCCACCCACTGTAATATGTTGGCATATAGTAGC
TCAAAGGGCTCTATTCGTCTTATAGATATGCGGCAGTCAGCTTTATGCGA
TACTCATAGCAAATTGTTTGAGGAACAGGAAGCTCCCGGTACGAGGTCTT
TTTTCACGGAGATAATTGCCTCCATTTCAGATATCAAGTTTGCCAGGAAT
GGAAGACATATATTAAGTCGTGACTACATGACCCTCAAGTTATGGGACAT
AAATATGGATTCTGGTCCTGTTGCAACTTTCCAGGTTCATGAACATCTAA
GACCTAAGTTGTGTGATTTATATGAAAATGATTCTATCTTTGACAAATTT
GAGTGTTGTCTGAGCGGAGATGGGGGTCGGGTGGCTACTGGTTCCTACAG
CAATCTGTTTCGCGTGTTTGGTGTT
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