FC875393

Overview
NameFC875393
Unique NameFC875393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:144..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_CARAU (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Carassius auratus GN=ppp2r2b PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.111e-83
Identity = 146/225 (64.89%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RRI+++AH YHINSIS NSD ET++S DDLRINLWNLEI+N+SFNIVD+KPANME+LTEVIT+AEFHP  CN   YSSSKGSIRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF+ +GR++++RDY+T+K+WDINM+S P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PTTITTLRVPVL-RPMDLMVEATPRRIFSNAHTYHINSISVNSDYETYMSTDDLRINLWNLEITNRSFNIVDIKPANMEELTEVITAAEFHPNQCNTFVYSSSKGSIRLCDMRTSALCDNHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYLMTRDYLTVKVWDINMESKPLETYQVHDYLRSKLCSLYENDCIFDKFECVWNGTDSVLMTGSYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: PH2AB_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit phr2AB OS=Dictyostelium discoideum GN=phr2AB PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.139e-82
Identity = 141/213 (66.20%), Postives = 180/213 (84.51%), Query Frame = 3
Query:   81 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            +T++ET + A  R+I+ +AH YHINSIS NSDGET+IS+DDLRI+LWNL I+ + FN+VD+KP NMEDLTEVITSAEFHPT CN+  YSSSKG+I+L D+R SALCD H+K+FEE E P  +SFF+EII+SISDIKF+R+GR+ILSRD++TLKLWDINM++ PV T Q+H++L+PKLCDLYEND IFDKFEC L+ DG ++ TGSY N   ++
Sbjct:  188 LTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDDLRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLRSSALCDNHAKVFEEYEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINMENKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIY 400          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABD_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Mus musculus GN=Ppp2r2d PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.487e-82
Identity = 142/225 (63.11%), Postives = 185/225 (82.22%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR SALCD H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+  PV T QVHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+F
Sbjct:  152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF 375          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_XENTR (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Xenopus tropicalis GN=ppp2r2b PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.487e-82
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  ++SLR+PV+    +  + A  RR++++AH YHINSIS NSD ET++SADDLRINLWNLEI+N+SFNIVD+KP NME+LTEVIT+AEFHP +CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF  +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PCTITSLRVPVL-RPMDLMVEATPRRVFSNAHTYHINSISVNSDYETYMSADDLRINLWNLEITNRSFNIVDIKPTNMEELTEVITAAEFHPHNCNTFVYSSSKGTIRLCDMRSSALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFNHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_XENLA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Xenopus laevis GN=ppp2r2b PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.487e-82
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  ++SLR+PV+    +  + A  RR++++AH YHINSIS NSD ET++SADDLRINLWNLEI+N+SFNIVD+KP NME+LTEVIT+AEFHP +CN   YSSSKG+IRL DMR SALCD HSKLFEE E P  RSFF+EII+SISD+KF  +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  167 PCTITSLRVPVL-RPMDLMVEATPRRVFSNAHTYHINSISVNSDYETYMSADDLRINLWNLEITNRSFNIVDIKPTNMEELTEVITAAEFHPHNCNTFVYSSSKGTIRLCDMRSSALCDKHSKLFEEPEDPSNRSFFSEIISSISDVKFNHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 390          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABD_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Rattus norvegicus GN=Ppp2r2d PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.651e-82
Identity = 141/225 (62.67%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP  CN+  YSSSKG+IRL DMR SALCD H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+  PV T  VHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FR+F
Sbjct:  152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHHVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF 375          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_SCHPO (Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.259e-81
Identity = 147/221 (66.52%), Postives = 179/221 (81.00%), Query Frame = 3
Query:   57 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            S LRLP +    +  + A  RR+YA+AH YHINSIS NSD ET+ISADDLRINLWNL IS+ SFNIVD+KP NME+LTEVITSAEFHP +CN L YSSSKG+I+L+D+RQSALCD   KLFE+QE   ++SFF+EII+SISD+KF++NGR+ILSRDY+TLK+WD+NM+  PV T  +H+ LR KLCDLYEND IFDKFEC  SGD   V +GSYSN F ++
Sbjct:  149 SQLRLPRL-NHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHSFNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFEDQEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIY 368          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_DROME (Protein phosphatase PP2A 55 kDa regulatory subunit OS=Drosophila melanogaster GN=tws PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.147e-81
Identity = 145/226 (64.16%), Postives = 182/226 (80.53%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLV-AGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  V++LR+P V   Q   LV A  RR +A+AH YHINSIS NSD ETF+SADDLRINLW+LE+ NQS+NIVD+KP NME+LTEVIT+AEFHPT CN+  YSSSKG+IRL DMR +ALCD HSK FEE E P  RSFF+EII+SISD+K + +GR+++SRDY+++K+WD++M++ P+ T+ VHE+LR KLC LYEND IFDKFECC +G    + TGSY+N FRVF
Sbjct:  199 PQNVTALRVPSV--KQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVF 422          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABG_MACFA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Macaca fascicularis GN=PPP2R2C PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.663e-81
Identity = 139/222 (62.61%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   54 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            V+SL++PV+    +  +    RRI+A+ H YHINSIS NSD ET++SADDLRINLW+L I+++SFNIVD+KPANMEDLTEVIT++EFHP HCN+  YSSSKGS+RL DMR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TG+Y+N FR+F
Sbjct:  145 VTSLQVPVL-KPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABG_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Homo sapiens GN=PPP2R2C PE=2 SV=4)

HSP 1 Score: 301.212 bits (770), Expect = 3.663e-81
Identity = 139/222 (62.61%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   54 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            V+SL++PV+    +  +    RRI+A+ H YHINSIS NSD ET++SADDLRINLW+L I+++SFNIVD+KPANMEDLTEVIT++EFHP HCN+  YSSSKGS+RL DMR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TG+Y+N FR+F
Sbjct:  145 VTSLQVPVL-KPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMF 365          
The following BLAST results are available for this feature:
BLAST of FC875393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABB_CARAU5.111e-8364.89Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
PH2AB_DICDI1.139e-8266.20Serine/threonine-protein phosphatase 2A regulatory... [more]
2ABD_MOUSE1.487e-8263.11Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_XENTR1.487e-8264.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_XENLA1.487e-8264.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABD_RAT5.651e-8262.67Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_SCHPO1.259e-8166.52Protein phosphatase PP2A regulatory subunit B OS=S... [more]
2ABA_DROME2.147e-8164.16Protein phosphatase PP2A 55 kDa regulatory subunit... [more]
2ABG_MACFA3.663e-8162.61Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_HUMAN3.663e-8162.61Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC31403D10EF CTVClemen1 Citrus clementina cDNA clone C31403D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875393 ID=FC875393; Name=FC875393; organism=Citrus clementina; type=EST; length=725bp
GAGAGAGAAACTTTGGATGTGCAAGCAATGACTCGTCCTTCCCCCCGGGT
GGTGTTTCATCTCTACGTTTGCCTGTGGTAGTTACCAGTCAGGAGACAAA
TCTTGTTGCTGGATGTCGAAGAATATATGCACATGCACATGATTATCATA
TTAACTCGATTTCAAATAACAGTGATGGTGAGACCTTTATATCGGCCGAT
GACCTGCGAATAAATCTCTGGAATTTGGAAATTAGCAATCAGAGTTTTAA
TATCGTAGATGTGAAACCTGCAAACATGGAGGATCTTACTGAGGTGATTA
CTTCCGCAGAATTTCACCCCACCCACTGTAATATGTTGGCATATAGTAGC
TCAAAGGGCTCTATTCGTCTTATAGATATGCGGCAGTCAGCTTTATGCGA
TACTCATAGCAAATTGTTTGAGGAACAGGAAGCTCCCGGTACGAGGTCTT
TTTTCACGGAGATAATTGCCTCCATTTCAGATATCAAGTTTGCCAGGAAT
GGAAGACATATATTAAGTCGTGACTACATGACCCTCAAGTTATGGGACAT
AAATATGGATTCTGGTCCTGTTGCAACTTTCCAGGTTCATGAACATCTAA
GACCTAAGTTGTGTGATTTATATGAAAATGATTCTATCTTTGACAAATTT
GAGTGTTGTCTGAGCGGAGATGGGGGTCGGGTGGCTACTGGTTCCTACAG
CAATCTGTTTCGCGTGTTTGGTGTT
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