FC875393

Overview
NameFC875393
Unique NameFC875393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:144..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABG_RABIT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Oryctolagus cuniculus GN=PPP2R2C PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.784e-81
Identity = 138/222 (62.16%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   54 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            V+SL++PV+    +  +    RRI+A+ H YHINSIS NSD ET++SADDLRINLW+L ++++SFNIVD+KPANMEDLTEVIT++EFHP HCN+  YSSSKGS+RL DMR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TG+Y+N FR+F
Sbjct:  145 VTSLQVPVL-KPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAVTDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABG_RAT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Rattus norvegicus GN=Ppp2r2c PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.392e-80
Identity = 138/222 (62.16%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   54 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            V+SL++PV+    +  +    RRI+A+ H YHINSIS NSD ET++SADDLRINLW+L I+++SFNIVD+KPANMEDLTEVIT++EFHP HCN+  YSSSKGS+RL DMR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYE+D IFDKFEC  +G    + TG+Y+N FR+F
Sbjct:  145 VTSLQVPVL-KPMDLMVEVSPRRIFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABG_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform OS=Mus musculus GN=Ppp2r2c PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.289e-80
Identity = 137/222 (61.71%), Postives = 182/222 (81.98%), Query Frame = 3
Query:   54 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            V+SL++PV+    +  +    RR +A+ H YHINSIS NSD ET++SADDLRINLW+L I+++SFNIVD+KPANMEDLTEVIT++EFHP HCN+  YSSSKGS+RL DMR +ALCD HSKLFEE E P  RSFF+EII+S+SD+KF+ +GR++L+RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYE+D IFDKFEC  +G    + TG+Y+N FR+F
Sbjct:  145 VTSLQVPVL-KPMDLMVEVSPRRTFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSDSVIMTGAYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_CANTR (Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.103e-77
Identity = 137/223 (61.43%), Postives = 177/223 (79.37%), Query Frame = 3
Query:   51 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            G+ SL+LP +    +  + A  ++IYA+AH YHINSIS NSD ET++SADDLRINLWNL I++QSFNIVD+KPANME+LTEVITSAEFHP  CN+  YSSSKG+I+L DMR ++LCD+H+K+FEE   P + +FFTEI +SISD+KF+ +GR+I SRDYMT+K+WD+ M++ P+ T  VHEHLR +LCD YEND+IFDKFE    GD   V TGSY+N F ++
Sbjct:  139 GIESLKLPQLQLHDKL-ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANMEELTEVITSAEFHPLQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDPSSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPIKTIDVHEHLRERLCDTYENDAIFDKFEVQFGGDNKSVMTGSYNNQFVIY 360          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_YEAST (Protein phosphatase PP2A regulatory subunit B OS=Saccharomyces cerevisiae GN=CDC55 PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 3.548e-76
Identity = 138/223 (61.88%), Postives = 174/223 (78.03%), Query Frame = 3
Query:   54 VSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            + SL+LP +  SQ   ++A   +RIY++AH YHINSIS NSD ETF+SADDLRINLWNL+I +QSFNIVD+KP NME+LTEVITSAEFHP  CN+  YSSSKG+I+L DMRQ++LCD  +K FEE   P   +FFTEI +SISDIKF+ NGR+I SRDY+T+K+WD+NMD+ P+ T  +HE L+ +L D YEND+IFDKFE   SGD   V TGSY+N F ++
Sbjct:  156 LQSLKLPQL--SQHDKIIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLDIPDQSFNIVDIKPTNMEELTEVITSAEFHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKTKTFEEYLDPINHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDVNMDNKPLKTINIHEQLKERLSDTYENDAIFDKFEVNFSGDSSSVMTGSYNNNFMIY 376          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_PIG (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Sus scrofa GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.068e-72
Identity = 130/225 (57.78%), Postives = 169/225 (75.11%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNI D+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SA         +E E P  RSF  ++ +SISD+KF++    I++RDY+T+K+WD+NM++ P+ T+QVH +LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIADIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASACVTGTPNFLKEPEDPSNRSFSLKLSSSISDVKFSQQWEDIMTRDYLTVKVWDLNMENRPIETYQVHNYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365          
The following BLAST results are available for this feature:
BLAST of FC875393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABG_RABIT4.784e-8162.16Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_RAT1.392e-8062.16Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABG_MOUSE5.289e-8061.71Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_CANTR1.103e-7761.43Protein phosphatase PP2A regulatory subunit B OS=C... [more]
2ABA_YEAST3.548e-7661.88Protein phosphatase PP2A regulatory subunit B OS=S... [more]
2ABB_PIG1.068e-7257.78Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC31403D10EF CTVClemen1 Citrus clementina cDNA clone C31403D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875393 ID=FC875393; Name=FC875393; organism=Citrus clementina; type=EST; length=725bp
GAGAGAGAAACTTTGGATGTGCAAGCAATGACTCGTCCTTCCCCCCGGGT
GGTGTTTCATCTCTACGTTTGCCTGTGGTAGTTACCAGTCAGGAGACAAA
TCTTGTTGCTGGATGTCGAAGAATATATGCACATGCACATGATTATCATA
TTAACTCGATTTCAAATAACAGTGATGGTGAGACCTTTATATCGGCCGAT
GACCTGCGAATAAATCTCTGGAATTTGGAAATTAGCAATCAGAGTTTTAA
TATCGTAGATGTGAAACCTGCAAACATGGAGGATCTTACTGAGGTGATTA
CTTCCGCAGAATTTCACCCCACCCACTGTAATATGTTGGCATATAGTAGC
TCAAAGGGCTCTATTCGTCTTATAGATATGCGGCAGTCAGCTTTATGCGA
TACTCATAGCAAATTGTTTGAGGAACAGGAAGCTCCCGGTACGAGGTCTT
TTTTCACGGAGATAATTGCCTCCATTTCAGATATCAAGTTTGCCAGGAAT
GGAAGACATATATTAAGTCGTGACTACATGACCCTCAAGTTATGGGACAT
AAATATGGATTCTGGTCCTGTTGCAACTTTCCAGGTTCATGAACATCTAA
GACCTAAGTTGTGTGATTTATATGAAAATGATTCTATCTTTGACAAATTT
GAGTGTTGTCTGAGCGGAGATGGGGGTCGGGTGGCTACTGGTTCCTACAG
CAATCTGTTTCGCGTGTTTGGTGTT
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