FC875395

Overview
NameFC875395
Unique NameFC875395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 4.977e-77
Identity = 143/215 (66.51%), Postives = 163/215 (75.81%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV GFML+ALIWKFDF PFMVLIIAILNDGTIMTISKDRVKPSP PDSWK  EIF TG+VLG Y+A+MTV+FFWAAYKTDFFPR F V  L  + H+    + SA+YLQVS +SQALIFVTRSRSWSF ERPG  LL+AF +AQLIAT IAVY NW F               LY+I+FY PLD +KF IRY L+G AW  +I+ R AFT ++
Sbjct:  655 IRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYMAIMTVVFFWAAYKTDFFPRTFHVRDLRGSEHE----MMSALYLQVSIVSQALIFVTRSRSWSFTERPGYFLLIAFWVAQLIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQ 865          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 2.731e-75
Identity = 145/215 (67.44%), Postives = 162/215 (75.35%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV GFML+ALIW+FDF  FMVLIIAILNDGTIMTISKDRVKPSP PDSWK  EIF TG+VLG Y A+MTVIFFWAA+KTDFF   FGV ++    H+    L  A+YLQVS ISQALIFVTRSRSWSFVERPG LL++AFLIAQLIATLIAVYANW F               LY+I+ Y PLD  KF IRY LSGKAW  + E + AFT ++
Sbjct:  654 IRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE----LMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKK 864          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.084e-75
Identity = 139/215 (64.65%), Postives = 168/215 (78.14%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV GFM +ALIWK+DF  FMVLIIAILNDGTIMTISKDRVKPSP+PDSWK  EIF TG+VLG Y A+MTV+FFWA + TDFF   FGV +L  +  +    + SA+YLQVS ISQALIFVTRSRSWSF+ERPG+LL++AF+IAQL+ATLIAVYANW+F               LY+IIFY+PLD +KF IRY LSGKAW+ +++ + AFT ++
Sbjct:  657 IRIVFGFMFIALIWKYDFSAFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGGYQALMTVVFFWAMHDTDFFSDKFGVKSLRNSDEE----MMSALYLQVSIISQALIFVTRSRSWSFLERPGMLLVIAFMIAQLVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKK 867          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.019e-74
Identity = 140/215 (65.12%), Postives = 168/215 (78.14%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGFML+ALIW+FDF PFMVLIIAILNDGTIMTISKDRVKPSP+PDSWK  EIF TG+VLG+Y+A++TV+FFW A+ T FF   FGV +L+    D+  +L + +YLQVS ISQALIFVTRSRSWSFVERPG+LLL+AF +AQLIATLIA YA+W F               +Y+I+ YIPLD +KF  RY LSGKAW+ +IE R AFT ++
Sbjct:  656 IRIVLGFMLVALIWEFDFSPFMVLIIAILNDGTIMTISKDRVKPSPIPDSWKLKEIFATGVVLGTYMALVTVVFFWLAHDTTFFSDKFGVRSLQ--GKDE--ELIAVLYLQVSIISQALIFVTRSRSWSFVERPGLLLLIAFFVAQLIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKK 866          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 4.360e-73
Identity = 140/215 (65.12%), Postives = 164/215 (76.28%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV GFML+ALIW+FDF  FMVLIIAILNDGTIMTISKDRVKPSP PDSWK  EIF TGIVLG Y A+M+VIFFWAA+KTDFF   FGV    ++  D+  +L  A+YLQVS ISQALIFVTRSRSWSFVERPG LL++AF+IAQL+ATLIAVYA+W+F               +Y+I+ Y P D +KF IRY LSGKAW  + + R AFT ++
Sbjct:  654 IRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGIVLGGYQAIMSVIFFWAAHKTDFFSDKFGV----RSIRDNNDELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFVIAQLVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKK 864          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA7_ARATH (ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.713e-73
Identity = 137/224 (61.16%), Postives = 168/224 (75.00%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATL---------EKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV+GFMLL + W+FDFPPFMVL+IAILNDGTIMTISKDRVKPSP PD WK  EIF TG+VLG+YLA+MTV+FFWAAY+T+FF  +F V            +K A     ++ASA+YLQVSTISQALIFVTRSRSWSFVERPG LL++AFLIAQL+A++I+  ANW F               ++NI+ Y+ LD IKF +RYALSGK+WD ++E R A T ++
Sbjct:  654 IRIVMGFMLLCVFWEFDFPPFMVLVIAILNDGTIMTISKDRVKPSPTPDCWKLKEIFATGVVLGAYLAIMTVVFFWAAYETNFFHNIFHVRNFNQHHFKMKDKKVAAHLNEQMASAVYLQVSTISQALIFVTRSRSWSFVERPGFLLVIAFLIAQLVASVISAMANWPFAGIRSIGWGWTGVIWIFNIVTYMLLDPIKFLVRYALSGKSWDRMVEGRTALTGKK 877          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA10_ARATH (ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 5.893e-70
Identity = 134/215 (62.33%), Postives = 166/215 (77.21%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIVLGF LLALIW++DFPPFMVLIIAILNDGTIMTISKDRV+PSP P+SWK  +IF TGIV+G+YLA++TV+F+W    T FF + F V    K+  ++  +++SA+YLQVS ISQALIFVTRSR WSF ERPG LL+ AF++AQL ATLIAVYAN SF               LY++IFYIPLD IKF   YALSG+AW+LV++++ AFT ++
Sbjct:  661 IRIVLGFTLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVRPSPTPESWKLNQIFATGIVIGTYLALVTVLFYWIIVSTTFFEKHFHV----KSIANNSEQVSSAMYLQVSIISQALIFVTRSRGWSFFERPGTLLIFAFILAQLAATLIAVYANISFAKITGIGWRWAGVIWLYSLIFYIPLDVIKFVFHYALSGEAWNLVLDRKTAFTYKK 871          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.313e-69
Identity = 133/215 (61.86%), Postives = 159/215 (73.95%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDLVIEQRIAFTRQR 646
            IRIV GFM +ALIW+FDF PFMVLIIAILNDGTIMTISKDR+KPSP PDSWK  +IF+TG+VLG Y A+MTV+FFW    +DFF   FGV  L +       ++ +A+YLQVS ISQALIFVTRSRSWS+ E PG+LLL AF+IAQL+AT IAVYANWSF               LY+ + YIPLD +KF IRY LSGKAW  ++E + AFT ++
Sbjct:  654 IRIVFGFMFIALIWQFDFSPFMVLIIAILNDGTIMTISKDRMKPSPQPDSWKLRDIFSTGVVLGGYQALMTVVFFWVMKDSDFFSNYFGVRPLSQRP----EQMMAALYLQVSIISQALIFVTRSRSWSYAECPGLLLLGAFVIAQLVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKK 864          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMAX_ARATH (Putative ATPase, plasma membrane-like OS=Arabidopsis thaliana GN=At4g11730 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.840e-55
Identity = 113/204 (55.39%), Postives = 138/204 (67.65%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRV-KPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGKAWDL 610
            IR+V GFM +ALIWKFDF PFMVL IA+LN+ T   I+ D V  PSP PDS K  EIF TG+V GSY+A++TV+FFWAAY+TD FPR F V  L      +  ++  A+YLQVS +SQAL FV +SRSW FVERPG LL ++F+  Q IAT +AVYA+W                 LYNIIF+ PLD +KF IRY L+GKA  L
Sbjct:  566 IRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDL----RGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSL 765          
BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_DICDI (Probable plasma membrane ATPase OS=Dictyostelium discoideum GN=patB PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 76/214 (35.51%), Postives = 109/214 (50.93%), Query Frame = 2
Query:    2 IRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSF---------------XXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGK 598
            +RI   F +L + W F FP    +IIAILNDGT++TISKDRV+    PD W   E+FT  +  G YL   T++FF   +   +F     +  L         +L   IYLQVS    A IFV+RS+ +S+ ERPG L++ AF+++Q++AT I VY    +                              ++  ++YIP+DFIK  + Y L GK
Sbjct:  794 VRICTTFGILTVAWNFKFPTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD------NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGK 1001          
The following BLAST results are available for this feature:
BLAST of FC875395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PMA3_ARATH4.977e-7766.51ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]
PMA2_ARATH2.731e-7567.44ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA4_NICPL6.084e-7564.65Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA6_ARATH3.019e-7465.12ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH4.360e-7365.12ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA7_ARATH9.713e-7361.16ATPase 7, plasma membrane-type OS=Arabidopsis thal... [more]
PMA10_ARATH5.893e-7062.33ATPase 10, plasma membrane-type OS=Arabidopsis tha... [more]
PMA5_ARATH1.313e-6961.86ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMAX_ARATH1.840e-5555.39Putative ATPase, plasma membrane-like OS=Arabidops... [more]
PMA1_DICDI1.734e-2935.51Probable plasma membrane ATPase OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC31403D12EF CTVClemen1 Citrus clementina cDNA clone C31403D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875395 ID=FC875395; Name=FC875395; organism=Citrus clementina; type=EST; length=686bp
CATTCGTATTGTGCTTGGTTTCATGCTGCTGGCGCTCATATGGAAGTTTG
ACTTTCCTCCATTTATGGTGCTTATCATTGCCATCCTGAATGATGGTACA
ATTATGACAATATCAAAAGATAGGGTGAAACCGTCTCCTCTGCCAGATAG
CTGGAAGCCTGCTGAAATTTTTACAACTGGCATTGTTCTTGGCAGTTACT
TGGCAATGATGACAGTTATTTTCTTCTGGGCAGCATATAAAACAGATTTC
TTTCCGAGAGTATTTGGGGTGGCAACCCTTGAGAAAACAGCTCATGATGA
CTTCCGAAAGCTTGCCTCAGCAATTTACTTGCAAGTGAGCACTATCAGTC
AGGCCCTTATATTCGTAACACGGTCAAGAAGTTGGTCTTTCGTTGAGCGA
CCTGGTATATTGCTGCTTGTGGCTTTTCTGATTGCTCAACTGATTGCTAC
TCTGATTGCCGTTTATGCAAACTGGAGTTTTGCTGCAATTGAAGGGATTG
GGTGGGGTTGGGCCGGTGTGGTCTGGCTTTACAACATCATCTTCTACATC
CCACTTGATTTCATTAAGTTCTTCATACGCTATGCTCTGAGTGGGAAGGC
CTGGGATCTTGTTATCGAGCAGAGGATTGCTTTCACAAGGCAAAGGATTT
TGGTAAGGAACACGTGAGCTTNCATGGGCACATGCA
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