FC875395

Overview
NameFC875395
Unique NameFC875395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC875395 vs. ExPASy Swiss-Prot
Match: PMA1_DUNBI (Plasma membrane ATPase OS=Dunaliella bioculata GN=PMA1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:    5 RIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKPAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFF 253
            RI   F L+ +I+ + FP  +++I+A+ NDG ++ +SKDRV  S  P+SW    IF  G+V G YL + T   +  A KT FF
Sbjct:  682 RICFTFGLITVIYDWYFPTILIVIMAVFNDGAMIALSKDRVVASKTPNSWNITNIFIMGMVYGLYLTLSTWALYQTATKTTFF 764
The following BLAST results are available for this feature:
BLAST of FC875395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PMA1_DUNBI5.606e-1240.96Plasma membrane ATPase OS=Dunaliella bioculata GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31403D12EF CTVClemen1 Citrus clementina cDNA clone C31403D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875395 ID=FC875395; Name=FC875395; organism=Citrus clementina; type=EST; length=686bp
CATTCGTATTGTGCTTGGTTTCATGCTGCTGGCGCTCATATGGAAGTTTG
ACTTTCCTCCATTTATGGTGCTTATCATTGCCATCCTGAATGATGGTACA
ATTATGACAATATCAAAAGATAGGGTGAAACCGTCTCCTCTGCCAGATAG
CTGGAAGCCTGCTGAAATTTTTACAACTGGCATTGTTCTTGGCAGTTACT
TGGCAATGATGACAGTTATTTTCTTCTGGGCAGCATATAAAACAGATTTC
TTTCCGAGAGTATTTGGGGTGGCAACCCTTGAGAAAACAGCTCATGATGA
CTTCCGAAAGCTTGCCTCAGCAATTTACTTGCAAGTGAGCACTATCAGTC
AGGCCCTTATATTCGTAACACGGTCAAGAAGTTGGTCTTTCGTTGAGCGA
CCTGGTATATTGCTGCTTGTGGCTTTTCTGATTGCTCAACTGATTGCTAC
TCTGATTGCCGTTTATGCAAACTGGAGTTTTGCTGCAATTGAAGGGATTG
GGTGGGGTTGGGCCGGTGTGGTCTGGCTTTACAACATCATCTTCTACATC
CCACTTGATTTCATTAAGTTCTTCATACGCTATGCTCTGAGTGGGAAGGC
CTGGGATCTTGTTATCGAGCAGAGGATTGCTTTCACAAGGCAAAGGATTT
TGGTAAGGAACACGTGAGCTTNCATGGGCACATGCA
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