FC875399

Overview
NameFC875399
Unique NameFC875399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2195 contig Ccv1_Contig2195:49..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.572e-34
Identity = 79/162 (48.77%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYE 492
            LL FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NPVHKK+PVLIHNG+P+ ES +I++YIDE ++  + +LP DPY RA ARFW  F+  K+  +   T+  KG            +LK L+ +L DK FF GD FG+ D++      W   +E
Sbjct:    6 LLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWSKFLGDKV-AAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFE 165          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.483e-34
Identity = 90/219 (41.10%), Postives = 118/219 (53.88%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKA----PLLPSDPYQRAQARFWVDFIDKKMYDSSRKTW------TTKGXXXXXXXXXXXXVLKTLEGQLGD----KPFFGGDNFGYVDLSLIPFYCWFYTYE-TCGKFSVE-AECPKFIARVKRCLQRETVAKALP-DGKKVFEF 612
            LL  W S + IRVR+ L  K + YEY EE+L +KS LLL  NPVHK +PVL+H GRPV ES +IVQYIDEVW   A     ++PSDPY+RA ARFW  ++D K+    R  W      +                L+TLEG  G+    KPFFGGD  G+VD+ L  +  WF   +   G+  ++ A  P   A  +R    +     +P D  K+ EF
Sbjct:    9 LLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKV----RPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.004e-32
Identity = 73/149 (48.99%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL 453
            LL    S F  RV  AL  KGVKYE+ EEDL+NKSPLLLQ NP+HKKIPVLIHNG+ +CES +I++YIDE ++  + +LP DPY RA ARFW  +++ K   +  K++ +KG            +LK L+ +  DK  F GD FG+ D+
Sbjct:    6 LLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPS-ILPKDPYDRALARFWAKYVEDK-GAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADI 152          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.148e-32
Identity = 83/213 (38.97%), Postives = 122/213 (57.28%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYD---SSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL---SLIPFYCWFYTYETCG-KFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVM 624
            LL  W S F  RV +AL  KG+ YEY EE L+NKSPLLL +NP+HKK+PVL+HNG+ + ES +I++YIDE W    P+LP DPY+R++ARF+   +D+++ +    S      KG            ++  LE +L  K +FGG   G++D    SLIPF C    +E  G +   E + P+F   V+   + E V   +P  ++  E ++ M
Sbjct:    9 LLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN-PILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKG--REVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPF-CLERGWEGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMNYM 217          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 71/221 (32.13%), Postives = 103/221 (46.61%), Query Frame = 1
Query:   25 SMFGIRVRIALAEKGVKYEYKEEDL-KNKSPLLLQMNPVHKKIPVLI-HNGRPVCESPIIVQYIDEVWKDKAP------LLPSDPYQRAQARFWVDFIDKKMYD-----SSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNF--GYVDLSLIPFYCWFYTYETC----GKFSVEAEC-PKFIARVKRCLQRETVAKALPDGKKVFEFVSVMR 627
            S F  R R+AL  +GV YE  +E L   KS  LL  NPV+ KIPVL+  +GR +CES +IVQYI++V ++         LLP DPY+RA  RFW  FID K +      S   T   +             + +  + +   + FF G +   G +DL+L    C+      C    G   ++A   P      +R        + LPD +KV +F   ++
Sbjct:    9 SPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLAL---GCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTRFLQ 226          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDL--KNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQAR 276
            VL  +W S    RVRIALA K V YEYK  DL  +     L ++NP   K+P  + +G+ + ES  I++Y++E   D  PLLP DP +RA AR
Sbjct:    7 VLYSYWRSSCSWRVRIALALKNVDYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPD-VPLLPKDPIKRAHAR 97          
The following BLAST results are available for this feature:
BLAST of FC875399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GSTX3_TOBAC2.572e-3448.77Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTU6_ORYSJ7.483e-3441.10Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX1_SOLTU7.004e-3248.99Probable glutathione S-transferase OS=Solanum tube... [more]
GSTXA_ARATH9.148e-3238.97Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX2_MAIZE3.731e-1732.13Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
MAAI_CAEEL1.794e-1144.09Probable maleylacetoacetate isomerase OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC31403E04EF CTVClemen1 Citrus clementina cDNA clone C31403E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875399 ID=FC875399; Name=FC875399; organism=Citrus clementina; type=EST; length=724bp
GGGGTTCTGTTGGATTTCTGGCCCAGCATGTTTGGGATAAGGGTCAGGAT
TGCTCTGGCGGAGAAAGGCGTCAAGTATGAGTACAAGGAAGAGGACTTGA
AGAACAAGAGCCCCCTGCTTCTGCAGATGAACCCCGTTCACAAGAAGATC
CCGGTTCTCATCCACAACGGCAGACCGGTCTGTGAGTCACCCATCATTGT
TCAGTACATTGATGAAGTGTGGAAGGACAAGGCTCCATTGCTTCCCTCTG
ATCCCTACCAGAGAGCTCAAGCTAGGTTCTGGGTAGATTTCATTGACAAG
AAGATGTACGATTCTTCGAGGAAGACATGGACCACAAAGGGAGAAGAGCA
GGAGGCAGCTAAGAAGGAGTTCTTTGAAGTTCTGAAGACTTTGGAAGGGC
AGCTTGGAGACAAGCCTTTCTTTGGAGGAGACAATTTTGGGTATGTGGAT
TTAAGTTTGATCCCATTCTATTGTTGGTTTTACACGTATGAGACATGTGG
AAAGTTCAGCGTCGAGGCTGAGTGCCCCAAGTTCATAGCTCGGGTGAAGA
GATGCTTGCAGAGGGAGACTGTTGCCAAGGCACTTCCTGATGGGAAGAAA
GTGTTTGAATTTGTTTCAGTGATGAGGACAAATTTAGGATTGGAGTAGAG
AGAAAAGGGACATACCTAGGAGCTGAGAATAAGTCAGCAGCGCAATCGTG
CTGCCTGCTTATTCTTTAGTGGNT
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