FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:7..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.521e-54
Identity = 97/157 (61.78%), Postives = 132/157 (84.08%), Query Frame = 3
Query:   99 G*EKMALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF 569
            G +   +  D+ G PFIL+R QE+K RL G+DA K+++ A K VA I+RTSLGP+G+DK+L SPDG++T+TNDGATIL+QM+V++QIAKL+V+LS+SQD EIGDGTTGVVV+AG+LLEQAE L+++GIHPIRIA+GYE A ++AV+HL+ I+   +F
Sbjct:    3 GLDNAVMVRDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDF 159          

HSP 2 Score: 31.5722 bits (70), Expect = 1.521e-54
Identity = 16/38 (42.11%), Postives = 23/38 (60.53%), Query Frame = 2
Query:  608 TTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T+L SK+V++     A     AVL+VADL+RK    +L
Sbjct:  173 TSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFEL 210          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 8.455e-46
Identity = 85/143 (59.44%), Postives = 123/143 (86.01%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            +A DE GRPFI+++ Q  K R  GL+A+K+++ A ++VA I++TSLGP+G+DK+L SPDG++TITNDGATIL QM++DN+IAKL+V+LS+SQD EIGDGTTGVVV+A +LL+QA +L+++GIHPI+IA G++ A+++A+  LE
Sbjct:   20 VAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLE 162          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.328e-39
Identity = 74/149 (49.66%), Postives = 110/149 (73.83%), Query Frame = 3
Query:  117 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV-DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            L  DE G+ F  +  +++  R++G     AN+   +++A  L TSLGP GMDK+LQS D D+ +TNDGATIL++M++ +N I++L+V+LS SQD EIGDGTT VVV+A +LL+QA+ LL +G+HPI+I+EG+E+    AVEHL  I+++
Sbjct:    4 LLTDELGQAF-QITDEDKGCRIKGQQCILANIGVVRSIATFLSTSLGPTGMDKILQSKDEDIVVTNDGATILKEMEMTENPISRLIVQLSESQDEEIGDGTTSVVVLASALLDQAQALLGQGVHPIKISEGFEVGLGHAVEHLSEISEE 151          

HSP 2 Score: 37.3502 bits (85), Expect = 2.328e-39
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 2
Query:  608 TTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T+L SK+V +   R AE C  AVL VAD+ERK    +L
Sbjct:  165 TSLGSKIVYKSLERFAEICTDAVLMVADMERKDLDFEL 202          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.130e-35
Identity = 71/135 (52.59%), Postives = 102/135 (75.56%), Query Frame = 3
Query:  162 QEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            Q  K + +  D +++N++A KAV+  +RTSLGP+GMDKM+Q+ +G+VTITNDGATIL+QM+V +  AK++VELSR+QD E GDGTT VVV+AG+LL+  EKLL+ GIHP  I++ ++  S  AV+ L  ++   E
Sbjct:   15 QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIE 149          

HSP 2 Score: 25.0238 bits (53), Expect = 9.130e-35
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  608 TTLNSKMVNRXQRRLAEDCCQAVLAVAD 691
            T+LNSK+V++   +LA    +AVL V +
Sbjct:  162 TSLNSKVVSQHSSQLAPIAVEAVLKVTE 189          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 73/144 (50.69%), Postives = 104/144 (72.22%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            G P ++L+  E   R  G DAQ+ N+ A + +A  ++++LGPKGMDKML    GDV ITNDG TIL++MDV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY MA+  AVE LE IA   +
Sbjct:    6 GTPVLILK--EGTQRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIAMDID 147          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 71/140 (50.71%), Postives = 103/140 (73.57%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+P I++   ++  R++  DAQ+ N+SA +AVA  +R++LGPKGMDKML S  GDVT+TNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLER IHP  I +GY +A+  A E ++ +A
Sbjct:    9 GQPMIIMG--DDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVA 146          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 71/142 (50.00%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G P ++L Q  +  R  G DAQ+ N+ AG+ +A  +RT+LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ IHP  I  GYEMA   AVE L+ IA++
Sbjct:    5 GAPIVVLPQNVK--RYVGRDAQRMNILAGRIIAETVRTTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEELKSIAKE 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 73/142 (51.41%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +AS+ A E L+ IA++
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAKE 145          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 74/142 (52.11%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G+P ++L   E   R  G DAQ+ N+ A + VA  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +A+  A E LE IA++
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAKE 145          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.175e-33
Identity = 72/141 (51.06%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIAR 144          

HSP 2 Score: 23.0978 bits (48), Expect = 2.175e-33
Identity = 13/39 (33.33%), Postives = 18/39 (46.15%), Query Frame = 2
Query:  605 MTTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            MT +  K     +  LAE   +AV  VA+      H+DL
Sbjct:  159 MTAITGKAAEEEREYLAEIAVEAVKQVAEKVGDRYHVDL 197          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPE_SCHPO1.521e-5461.78T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_YEAST8.455e-4659.44T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPE_ENCCU2.328e-3949.66T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPD_AEDTR9.130e-3552.59T-complex protein 1 subunit delta OS=Aedes triseri... [more]
THSA_ARCFU3.333e-3450.69Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSB_HALSA9.697e-3450.71Thermosome subunit beta OS=Halobacterium salinariu... [more]
THS_METJA1.266e-3350.00Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THS_PYRHO1.654e-3351.41Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_DESSY1.654e-3352.11Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_THEK82.175e-3351.06Thermosome subunit beta OS=Thermococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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