FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24
Identity = 57/139 (41.01%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  138 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+G GTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 53/138 (38.41%), Postives = 93/138 (67.39%), Query Frame = 3
Query:  141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            P +LL++  + S+  GL    +N++A  A+   +RT+LGP+GMDK++   +  VTI+NDGAT+++ +D+ +  A+ +V++++SQD E+GDGTT VV++AG  L+ A+  LE GIHP  I   +  A  +A + ++ ++
Sbjct:    8 PIVLLKEGTDTSQ--GLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELS 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD----GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER 548
            RG  A+ ++     A+  +++++LGPKGMDK+L S +    G + +TNDGATIL+ + VDN  AK++V++S +QD+E+GDGTT V V+A  LL++AEKL+ + IHP  I  GY  A  IA E L++
Sbjct:   15 RGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK 140          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQS-PDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            RG +A+ ++     AV  +++++LGPKGMDK+LQS   GD+ +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V A  LL QAE ++   IHP  I +GY +A++ A++ L
Sbjct:   17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDAL 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 55/141 (39.01%), Postives = 96/141 (68.09%), Query Frame = 3
Query:  141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKF 563
            P +LL++  + ++ R    +  N++A + +  I++T+LGP+GMDK++ + + DVTITNDGAT++  +++ +  A ++V++++SQD E+GDGTT VVV+AG LL +A+ LL  GI P  I +G+  A  +A+  L  ++  F
Sbjct:    8 PIVLLKEGTDTAQGRSQIIR--NINACQIIVDIVKTTLGPRGMDKLIYT-ERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNF 145          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 58/138 (42.03%), Postives = 91/138 (65.94%), Query Frame = 3
Query:  141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            P I+L++  + S+ RG     +N++A  AV   +RT+LGP G DK++    G+V I+NDGATI++ +D+ +  AK +V+++R+QD E+GDGTT VVV AG LL +A   +E G+    I  GY  A+++AV  ++ IA
Sbjct:    9 PVIVLKEGTDDSQGRG--QLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIA 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  195 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIA 554
            A+ A +SA     AV  +++++LGPKGMDK+LQS   +   +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V++  LL +AEKL+++  IHP  I EGY +AS  A++ L + A
Sbjct:   15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAA 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 47/114 (41.23%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            +N++A +++  I++T+LGP+GMDK+++   G  TI+NDGATIL  +D+ +  AK +V+++++QD E+GDGTT V ++AG LL++++  +E G+HP  + +GY+ A ++A+  L+
Sbjct:   24 SNINAVQSIVEIVKTTLGPRGMDKLIEGNRG-ATISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEALKLALTFLQ 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 56/133 (42.11%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  165 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDG--DVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            +  S  RG  A+ ++     A+  +++T+LGPKGMDK+L S     ++ ITNDGATIL ++ +DN  AK++V++SR+QD E+GDGTT V V+AG LL + E+L+++ +HP  I  G+ +A   A   L+   Q
Sbjct:   13 QNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQ 145          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL 141          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPG_MACFA1.403e-2441.01T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPH_DICDI1.833e-2438.41T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPB_CAEEL1.833e-2446.03T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPB_SCHPO2.394e-2447.11Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPH_PLAF73.127e-2439.01T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPH_SCHPO6.965e-2442.03Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPB_YEAST2.647e-2347.20T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPH_TETPY1.006e-2241.23T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPB_DICDI1.006e-2242.11T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPB_RAT6.519e-2249.07T-complex protein 1 subunit beta OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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