FC875400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24 Identity = 57/139 (41.01%), Postives = 85/139 (61.15%), Query Frame = 3 Query: 138 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 RP ++L Q ++ G Q N++A K +A I+RT LGPK M KML P G + +TNDG IL ++ V + AK M+E+SR+QD E+G GTT V+++AG +L AE LE+ +HP + Y A + L++I+ Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS 141
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24 Identity = 53/138 (38.41%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 P +LL++ + S+ GL +N++A A+ +RT+LGP+GMDK++ + VTI+NDGAT+++ +D+ + A+ +V++++SQD E+GDGTT VV++AG L+ A+ LE GIHP I + A +A + ++ ++ Sbjct: 8 PIVLLKEGTDTSQ--GLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELS 143
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24 Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 3 Query: 183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD----GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER 548 RG A+ ++ A+ +++++LGPKGMDK+L S + G + +TNDGATIL+ + VDN AK++V++S +QD+E+GDGTT V V+A LL++AEKL+ + IHP I GY A IA E L++ Sbjct: 15 RGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK 140
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24 Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 3 Query: 183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQS-PDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 RG +A+ ++ AV +++++LGPKGMDK+LQS GD+ +TNDGATIL+ + +DN AK++V +S+ QD E+GDGTT V V A LL QAE ++ IHP I +GY +A++ A++ L Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDAL 137
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24 Identity = 55/141 (39.01%), Postives = 96/141 (68.09%), Query Frame = 3 Query: 141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKF 563 P +LL++ + ++ R + N++A + + I++T+LGP+GMDK++ + + DVTITNDGAT++ +++ + A ++V++++SQD E+GDGTT VVV+AG LL +A+ LL GI P I +G+ A +A+ L ++ F Sbjct: 8 PIVLLKEGTDTAQGRSQIIR--NINACQIIVDIVKTTLGPRGMDKLIYT-ERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNF 145
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24 Identity = 58/138 (42.03%), Postives = 91/138 (65.94%), Query Frame = 3 Query: 141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 P I+L++ + S+ RG +N++A AV +RT+LGP G DK++ G+V I+NDGATI++ +D+ + AK +V+++R+QD E+GDGTT VVV AG LL +A +E G+ I GY A+++AV ++ IA Sbjct: 9 PVIVLKEGTDDSQGRG--QLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIA 144
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23 Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 3 Query: 195 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIA 554 A+ A +SA AV +++++LGPKGMDK+LQS + +TNDGATIL+ + +DN AK++V +S+ QD E+GDGTT V V++ LL +AEKL+++ IHP I EGY +AS A++ L + A Sbjct: 15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAA 139
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22 Identity = 47/114 (41.23%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545 +N++A +++ I++T+LGP+GMDK+++ G TI+NDGATIL +D+ + AK +V+++++QD E+GDGTT V ++AG LL++++ +E G+HP + +GY+ A ++A+ L+ Sbjct: 24 SNINAVQSIVEIVKTTLGPRGMDKLIEGNRG-ATISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEALKLALTFLQ 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22 Identity = 56/133 (42.11%), Postives = 87/133 (65.41%), Query Frame = 3 Query: 165 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDG--DVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 + S RG A+ ++ A+ +++T+LGPKGMDK+L S ++ ITNDGATIL ++ +DN AK++V++SR+QD E+GDGTT V V+AG LL + E+L+++ +HP I G+ +A A L+ Q Sbjct: 13 QNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQ 145
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22 Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 225 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A E L Sbjct: 34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL 141 The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 406
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bpback to top |