FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L++M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  +AEG+E+A   A+E LE++
Sbjct:   14 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLQEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVAEGFEIAKEKALEVLEQV 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A + L
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQAL 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 51/117 (43.59%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            +N++A  AV   L+ +LGP G D ++ + +   TI+NDGATIL+ +DV +  AK +V++SR+QD E+GDGTT V ++AG L+++A+  LE GI    I +GY  A  +AVE +  +A
Sbjct:   28 SNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELA 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMA 518
            +AQ+    A K+VA I++T LGPK M KM+  P G   +TNDG  IL ++DV +  AK M+ELSR+QD  +GDGTT VV++A  +L  +E  +E+ IHP  I + + MA
Sbjct:   19 EAQQGIFLAVKSVASIIKTCLGPKAMLKMILDPMGTTVVTNDGNAILREIDVTHPAAKSMIELSRAQDENVGDGTTSVVILAAEVLASSELFIEKKIHPHYIIKAFRMA 127          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  150 LLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            +++QQ   +  R   A   N+SAGK +  +L+T+LGP+G  KML    GD+ +T DG  +L +M + +  A L+   + +QD   GDGTT  V+  G LL+Q+E+ L+  IHP  IAEG+E+A    +  LE   Q
Sbjct:    4 MIKQQGAAADSRRGQALLLNISAGKGLQNVLKTNLGPRGTLKMLVGGGGDIKLTKDGKVLLHEMQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGFELAKDRCLAFLEEFKQ 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            R   A   N+ A + +  +LRT+LGPKG  KML S  GDV +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  IAEG+E+A   A+E LE++  K E
Sbjct:   15 RAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQVKIKKE 142          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE++
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQV 137          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPB_MACFA6.519e-2249.07T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN6.519e-2249.07T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_MOUSE8.515e-2249.07T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPZ_CHICK1.112e-2141.46T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPB_BOVIN1.452e-2148.15T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPH_YEAST3.236e-2143.59T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPG_DICDI3.236e-2146.79T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPZ_DICDI4.226e-2138.97T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPW_BOVIN4.226e-2142.19T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPZ_MOUSE9.414e-2140.65T-complex protein 1 subunit zeta OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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