FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE++
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQV 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+ A + +  +LRT+LGPKG  KML S  GD+ +T DG  +L++M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  IAEG+E A   A+E LE +
Sbjct:   15 RAQAALAVNICAARGLQDVLRTNLGPKGTMKMLASGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEV 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE+I
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQI 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE +
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEV 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDGTT  V++ G LL+QA+  +  G+HP  I EG+E A   A++ LE +
Sbjct:   15 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEV 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.010e-20
Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            A + N+S  + +  ++R++LGPKG  KML S  GD+ +T DG  +L +M + +  A ++ + S +QD   GDGTT  V++ G LL+QAE L+  G+HP  + EG+E A+   +E LE+  ++
Sbjct:   19 ALELNISGARGLQDVMRSNLGPKGTLKMLVSGAGDIKLTKDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGLHPRIVTEGFEWANTKTLELLEKFKKE 140          

HSP 2 Score: 20.7866 bits (42), Expect = 7.010e-20
Identity = 12/39 (30.77%), Postives = 18/39 (46.15%), Query Frame = 2
Query:  602 CMTTLNSKMVNRXQRRLAEDCCQAVLAV-ADLERKGCHL 715
            C T L +K+  +    + E    AVLA+  D E    H+
Sbjct:  152 CRTALRTKLHQKLADHITECVVDAVLAIRRDGEEPDLHM 190          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 44/119 (36.97%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  198 QKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            Q  +  A K ++ ++RT LGP+ M KM+ +    + +TNDG  IL ++DV +  A+ ++EL+++QD E+GDGTT VV++A  +L +   +L+R +HPIRI +    A  I ++ ++  A
Sbjct:   21 QNESAIAAKTISSVIRTCLGPRAMQKMVLTKINSIELTNDGNAILRELDVAHPSARSLIELAKTQDDEVGDGTTSVVLLAAEILNEMTYILDRDVHPIRICKALGRALEICIKAIDGAA 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 47/123 (38.21%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            R   A   N+ A + +  +LR +LGPKG  KML S  GD+ +T DG  +L +M + +  A ++ +++ +QD+  GDGTT  V++ G LL+QA+  +  G+HP  I EG+++A   A+E L+ I
Sbjct:   15 RSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEI 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            +A   N+ A K +A+  RT+ GP GM+KM+ +    + +TND ATIL +++V +  AK++V  S  Q+ E+GDGT  V+V AG+LLE AE+LL  G+    + EGYE+A R A E L  +
Sbjct:   27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNL 146          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            +A   N+ A K +A+  RT+ GP GM+KM+ +    + +TND ATIL +++V +  AK++V  S  Q+ E+GDGT  V+V AG+LLE AE+LL  G+    + EGYE+A R A E L  +
Sbjct:   27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNL 146          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPZ_BOVIN9.414e-2140.65T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPW_HUMAN9.414e-2141.46T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPZ_RABIT1.229e-2041.46T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPZ_PONAB1.229e-2040.65T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_HUMAN1.229e-2040.65T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPZ_CAEEL7.010e-2038.52T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPG_ENCCU1.041e-1936.97T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
TCPW_MOUSE2.319e-1938.21T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPQ_PONAB2.319e-1943.33T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_MACFA2.319e-1943.33T-complex protein 1 subunit theta OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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