FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            +A   N+ A K +A+  RT+ GP GM+KM+ +    + +TND ATIL +++V +  AK++V  S  Q+ E+GDGT  V+V AG+LLE AE+LL  G+    + EGYE+A R A E L  +
Sbjct:   27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNL 146          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_DICDI (T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  207 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            N+ A K ++ I RTSLGP GM+KM+ +    + +TND ATI+ ++DV +  AK++V  ++ Q+ E+GDGT  VV + G  L++A  LLE G+HP  I  G+E A     E +E
Sbjct:   25 NIDATKQLSEITRTSLGPNGMNKMIINHLEKLFVTNDAATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEIITGFEKAGAKLQEIIE 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_BOVIN (T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            +A   N+ A K +A+  RT+ GP GM+KM+ +    + +TND ATIL +++V +  AK++V  S  Q+ E+GDGT  V+V AG+LLE AE+LL  G+    + EGYE+A + A E L
Sbjct:   27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEIL 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_ENCCU (T-complex protein 1 subunit delta OS=Encephalitozoon cuniculi GN=CCT4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  216 AGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            A +++ + L TSLGP+G+DKM+   D    +TNDGATIL+ ++  + I  ++  +S +QD E GDGTT VV++AG LLE    LLER +HP  I +  E+A +I + +++R+
Sbjct:   16 ASQSLLQTLSTSLGPRGLDKMVVK-DKKTVVTNDGATILKYLN-HHPIHGILSSMSATQDEECGDGTTSVVILAGCLLESISSLLERNVHPSVICDNLEIAKKIGLRYIDRV 125          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_CHICK (T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            +A   N+ A K +A+  RT+ GP GM+KM+ +    + +TND ATIL +++V +  AK++V  S  Q+ E+GDGT  V+V AG LLE AE LL  G+    + EGYE A + A+E L
Sbjct:   27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMLVMASHMQEQEVGDGTNFVLVFAGVLLELAEDLLRMGLSVSEVIEGYEKACKKALEIL 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 52/126 (41.27%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI-AQKFE 566
            DA   N +A + ++ I RTSLGP G +K++ +      +TND ATI+ +++V +  AKL+V+ ++ Q+ E+GD    VVV  G LL +AE ++  G+ P+ IA+GYEMA    +E LE I A K E
Sbjct:   26 DAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIE 151          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  180 LRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            LR   A K NV++ + +  +L T+LGPKG  KML    G++ +T DG  +L +M + +  A L+   + +QD   GDGTT VV + G LL QA + ++ G+HP  I +G+E+A + +++ L+
Sbjct:   13 LRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLD 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            +A   N+ A K +A+  RT+ GP GM+KM+ +    + +TND ATIL +++V +  AK++V  S  Q+ E+GDGT  V+V AG+LLE AE+LL  G+    +  GYE+A + A E L  +
Sbjct:   27 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPEL 146          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 44/121 (36.36%), Postives = 80/121 (66.12%), Query Frame = 3
Query:  207 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFE 566
            NV A + +A IL TS+GP G +K++ +  G   ITND AT+L ++++ + + K++++ S+ Q++E+GD T  V+++AG  L  AEKLL  G++   I +G+ +A++  ++ L E + +K E
Sbjct:   31 NVEAVREIASILLTSMGPSGRNKIIVNKLGKKFITNDAATMLNELEIVHPVVKILIQASKQQEFEMGDNTNLVIILAGEFLNVAEKLLTLGLNVSEIIQGFNLANKFVMKTLDELVVEKVE 151          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            A + N+SA   +  +L+++LGP G  KML    G + +T DG  +L +M + N  A  + + + +QD   GDGTT V ++ G LL+QAE  +  G+HP  I++G+ +A   A+  L+     FE
Sbjct:   17 ALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPQ_HUMAN2.319e-1943.33T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
TCPQ_DICDI5.166e-1942.48T-complex protein 1 subunit theta OS=Dictyostelium... [more]
TCPQ_BOVIN5.166e-1943.59T-complex protein 1 subunit theta OS=Bos taurus GN... [more]
TCPD_ENCCU5.166e-1942.86T-complex protein 1 subunit delta OS=Encephalitozo... [more]
TCPQ_CHICK6.746e-1943.59T-complex protein 1 subunit theta OS=Gallus gallus... [more]
TCPQ_SCHPO8.811e-1941.27Probable T-complex protein 1 subunit theta OS=Schi... [more]
TCPZ_YEAST1.503e-1837.70T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPQ_MOUSE1.963e-1841.67T-complex protein 1 subunit theta OS=Mus musculus ... [more]
TCPQ_CANAL1.963e-1836.36T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPZ_SCHPO7.459e-1835.48T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
back to top