FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  183 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            RG DA++  ++    V  IL+T+LGPKGM KML+     V +TNDGA IL  + +D+  A++++  S  QD+E GDGTT V ++A  L+++A KL    +HP +I  GY MA     E L  I+
Sbjct:   15 RGDDAKRTILAGTDIVGDILKTTLGPKGMLKMLKGQH--VNVTNDGAFILNNLMIDSPSARILIGSSTGQDWEEGDGTTSVAILASLLVKEAGKL---EMHPTKILRGYRMAQAKCEEILSSIS 133          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_PIG (T-complex protein 1 subunit gamma (Fragment) OS=Sus scrofa GN=CCT3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 3
Query:  213 SAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQA 458
            +A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  A
Sbjct:    1 NAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVA 82          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  162 QEEKSRLRGLD-AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            +E     +G D A + N+ A   +A  +R++ GP GM+KM+ +    + +TND ATIL+++++ +  A++++  +  Q+ +IGD T  VV++A +LLE A  L+  G+ P  +A GYE A+  A+E L  +  K
Sbjct:   15 KEGAQHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEKLFVTNDAATILKELEIQHPAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHMGMTPQEVAAGYEQAAEKALEILPTLVVK 148          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPZ_PIG (T-complex protein 1 subunit zeta (Fragment) OS=Sus scrofa GN=CCT6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHP 488
            A   N+SA + +  +LRT+LGPKG  KML S  GD+ +T DG  +L +M + +  A L+ +++ +QD   GDG T  V++ G LL+QA+  +  G+HP
Sbjct:    4 ALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGXTSNVLIIGELLKQADLYISEGLHP 101          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 38/115 (33.04%), Postives = 74/115 (64.35%), Query Frame = 3
Query:  207 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            +++A + + ++  TS+GP G +K++ +  G + ITND AT+L ++D+ +   K++V  +  Q  ++GDGT  V+++AG LL  +EKL+  G+  + I +GY MA +  ++ L+ +
Sbjct:   31 SIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEM 145          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 43/121 (35.54%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +NV     +A  L ++LGP GMDK+    +  + +TNDGATIL+ M++ + + +L+V LS SQD E+GDGTT VV++   +L   + L++       I    E    + +EHLE++  + +
Sbjct:   23 SNVDVCTKIAEFLESTLGPYGMDKLFAGKE--IVVTNDGATILKHMNIRHPVGRLLVALSESQDSEVGDGTTSVVILTTEILSCLKPLIKDNFDLGCIKGCLEELRMMCIEHLEKMGMELD 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+ A +     +A  ++T+LGPKG + +L    G   ITNDG TI + +D++    N  AKL+ E++   +   GDGTT   V+A S++ +  K +  G +P+ I  G E A++ AV+ L +I+ K
Sbjct:   10 DARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+ A +     +A  ++T+LGPKG + +L    G   ITNDG TI + +D++    N  AKL+ E++   +   GDGTT   V+A S++ +  K +  G +P+ I  G E A++ AV+ L +I+ K
Sbjct:   10 DARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+ A +     +A  ++T+LGPKG + +L    G   ITNDG TI + +D++    N  AKL+ E++   +   GDGTT   V+A S++ +  K +  G +P+ I  G E A++ AV+ L +I+ K
Sbjct:   10 DARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 46/144 (31.94%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+DA          +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A  +AVE L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDA----------LADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGIEQAVAVAVESLKEISKPIE 138          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
TCPB_ENCCU9.742e-1841.94T-complex protein 1 subunit beta OS=Encephalitozoo... [more]
TCPG_PIG1.662e-1751.22T-complex protein 1 subunit gamma (Fragment) OS=Su... [more]
TCPQ_CAEEL4.835e-1734.33T-complex protein 1 subunit theta OS=Caenorhabditi... [more]
TCPZ_PIG9.118e-1640.82T-complex protein 1 subunit zeta (Fragment) OS=Sus... [more]
TCPQ_YEAST9.118e-1633.04T-complex protein 1 subunit theta OS=Saccharomyces... [more]
TCPH_ENCCU9.118e-1635.54T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
CH60_LACZE1.317e-1435.4360 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]
CH60_LACCB1.317e-1435.4360 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC31.317e-1435.4360 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH60_BACLD2.246e-1431.9460 kDa chaperonin OS=Bacillus licheniformis (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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