FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PSYA2 (60 kDa chaperonin OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 39/127 (30.71%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+DA+K  +     +A  +R +LGPKG + ++    G  TIT DG ++ ++++++N+     A+L+ E++   +   GDGTT   V+A S+L++  K +  G++P+ +  G + A R AVE +  ++
Sbjct:    8 GIDARKQMMDGVNILANAVRVTLGPKGRNVVIDKSFGAPTITKDGVSVAKEIELENKFENMGAQLVREVASRTNDVAGDGTTTATVLAQSILQEGMKSVAAGMNPMDLKRGIDKAVRAAVEQIHLLS 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+D           +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   A+E L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDT----------LANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKAISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACCR (60 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+D           +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   A+E L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDT----------LANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKTISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACCE (60 kDa chaperonin OS=Bacillus cereus GN=groL PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+D           +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   A+E L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDT----------LANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKTISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACC4 (60 kDa chaperonin OS=Bacillus cereus (strain B4264) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+D           +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   A+E L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDT----------LANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKTISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BACC2 (60 kDa chaperonin OS=Bacillus cereus (strain G9842) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  147 ILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            I   ++  +S LRG+D           +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   A+E L+ I++  E
Sbjct:    5 IKFSEEARRSMLRGVDT----------LANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKTISKPIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPZ (60 kDa chaperonin OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A+  AVE L+ IAQ
Sbjct:   10 DARAAMVRGVDMLADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVHEGLKNVTAGANPIGIRRGIETATATAVEALKAIAQ 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPM (60 kDa chaperonin OS=Streptococcus pyogenes serotype M28 GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A+  AVE L+ IAQ
Sbjct:   12 DARAAMVRGVDMLADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVHEGLKNVTAGANPIGIRRGIETATATAVEALKAIAQ 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPG (60 kDa chaperonin OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A+  AVE L+ IAQ
Sbjct:   10 DARAAMVRGVDMLADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVHEGLKNVTAGANPIGIRRGIETATATAVEALKAIAQ 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPF (60 kDa chaperonin OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A+  AVE L+ IAQ
Sbjct:   12 DARAAMVRGVDMLADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVHEGLKNVTAGANPIGIRRGIETATATAVEALKAIAQ 137          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_PSYA24.236e-1330.7160 kDa chaperonin OS=Psychrobacter arcticus (strai... [more]
CH60_BACWK4.236e-1330.5660 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_BACCR4.236e-1330.5660 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]
CH60_BACCE4.236e-1330.5660 kDa chaperonin OS=Bacillus cereus GN=groL PE=1 ... [more]
CH60_BACC44.236e-1330.5660 kDa chaperonin OS=Bacillus cereus (strain B4264... [more]
CH60_BACC24.236e-1330.5660 kDa chaperonin OS=Bacillus cereus (strain G9842... [more]
CH60_STRPZ5.532e-1335.7160 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPM5.532e-1335.7160 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPG5.532e-1335.7160 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPF5.532e-1335.7160 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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