FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            G+P I+L   E+  R  G DAQ  N++AGKAVA  +RT+LGPKGMDKML    G V +TNDG TIL++MD+D+  A ++VE+S +Q+ E+GDGTT  V+ AG LL+QAE LL+  +H   IA+GY  A+  A E LE
Sbjct:    8 GQPMIILG--EDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLE 142          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 71/144 (49.31%), Postives = 103/144 (71.53%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            G+P I++   E+  R++  DAQ+ N+ A +AVA  +R++LGPKGMDKML    GDVTITNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLE+ IHP  I  G+ +AS  A E ++ IA++ +
Sbjct:    8 GQPMIIMG--EDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVD 149          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.804e-33
Identity = 69/142 (48.59%), Postives = 99/142 (69.72%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G+P  +L+  E   R  G DA K N+ A  A++  +R+SLGP+GMDKML    GD+ ITNDG TIL++MDV++  AK+MVE+S++QD  +GDGTT  V++AG LL+QA+ L+ + +HP  I+EGY MAS  A   ++ I+ K
Sbjct:    4 GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK 143          

HSP 2 Score: 25.0238 bits (53), Expect = 4.804e-33
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 2
Query:  608 TTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLD 718
            T+LNSK  +  + +LAE   +AV +VA+L     ++D
Sbjct:  158 TSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVD 194          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 73/142 (51.41%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRID 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 73/144 (50.69%), Postives = 100/144 (69.44%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            GR  ++L   E   R  G DAQ+ N+ A + VA  +RT+LGP GMDKML    GDV +TNDG TILE+MD+++  AK++VE++++Q+ E+GDGTT  VV+AG LL +AE LL++ IHP  IA GY MA   A E LE IA++ +
Sbjct:    8 GRQVLIL--PEGYQRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAEEID 149          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 72/141 (51.06%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 72/141 (51.06%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 71/140 (50.71%), Postives = 102/140 (72.86%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+P ++LR  E   R  G DAQ+ N+ A + +A  +R++LGPKGMDKML    GDV ITNDG TIL+++DV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY  A+  A+E L  IA
Sbjct:    6 GQPVLILR--EGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIA 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 73/142 (51.41%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRID 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 72/123 (58.54%), Postives = 93/123 (75.61%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG 572
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  AK++VELS++QD E GDGTT VVV+AG+LL+   +LL+RGIHP  I+E ++ A    VE L  ++Q  + G
Sbjct:   33 SNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLG 155          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
THS1_HALVO2.821e-3352.55Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THS2_HALVO3.685e-3349.31Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSB_THEAC4.804e-3348.59Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_SULSO4.812e-3351.41Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THS_METKA6.285e-3350.69Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSB_THEK16.285e-3351.06Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO6.285e-3351.06Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSB_ARCFU6.285e-3350.71Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_SULSH6.285e-3351.41Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPD_TAKRU6.285e-3358.54T-complex protein 1 subunit delta OS=Takifugu rubr... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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