FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_VIBCH (60 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 39/133 (29.32%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            K  L   DA++  +S    +A  ++ +LGPKG   +L    G  TIT DG ++ +++++    +N  A+++ +++   + E GDGTT   V+A +L+ +  K +  G++P+ +  G + A   AVE L ++A+
Sbjct:    4 KHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_ECOK1 (60 kDa chaperonin 2 OS=Escherichia coli O1:K1 / APEC GN=groL2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 38/128 (29.69%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++       GDGTT   V+A +L+ +  K +  G++P+ +  G + A   AVE L++I++
Sbjct:    9 GEDARARMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTSDNAGDGTTTATVLAQALIREGMKAVAAGMNPMDLKRGIDKAVTSAVEELKKISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_VIBC3 (60 kDa chaperonin 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 39/133 (29.32%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            K  L   DA++  +S    +A  ++ +LGPKG   +L    G  TIT DG ++ +++++    +N  A+++ +++   + E GDGTT   V+A +L+ +  K +  G++P+ +  G + A   AVE L ++A+
Sbjct:    4 KHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_ANADF (60 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 36/125 (28.80%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            A++A +   + +A  +  +LGPKG + +++   G  TIT DG T+ ++++V+N+     A+++ E++     + GDGTT   V+A +L E+  KL+  G +P+ +  G + A  + V  L+++++
Sbjct:   12 AREAILRGVQTLAEAVAVTLGPKGRNVVIEKSFGSPTITKDGVTVAKEIEVENKFENMGAQMVREVASQTSDKAGDGTTTATVLARALFEEGLKLVAAGHNPMDLKRGIDRAVEVIVAELKKLSK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 42/127 (33.07%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            +A+KA  S    +A  ++ +LGPKG   +L    G  TITNDG TI +++++    +N  A+L+ E++   +   GDGTT   V+A SL+ +  K +  G +   I +G E A   A++ +++IA++
Sbjct:   10 EARKAMKSGVDKLANAVKITLGPKGRYVVLDKKFGAPTITNDGVTIAKEIELEDPFENMGAQLVKEVASKTNDIAGDGTTTATVLAQSLINEGLKNITAGANANHIKKGIEKAVAAAIDEIKKIAKQ 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_TSUPA (60 kDa chaperonin OS=Tsukamurella paurometabola GN=groL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 38/118 (32.20%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            A+A  ++ +LGPKG + +L+   G  TITNDG +I +++++++      A+L+ E+++  D   GDGTT   V+A +L+ +  + +  G +P+ +  G E A     EHL + A++ E
Sbjct:   21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNMAAGANPLGLKRGIEKAVEAVTEHLLKEAKEVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_TREDE (60 kDa chaperonin OS=Treponema denticola GN=groL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 35/136 (25.74%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            K  L   +A+K+ ++  + ++  ++ +LGPKG + ++    G  T+T DG ++  +++++N+     A+L+ E++   +   GDGTT   V+A S++++  K +  G+ P+ +  G + A  IAVE +++ +++ +
Sbjct:    3 KQLLFNEEARKSLLAGVEQISNAVKVTLGPKGRNVLIDKSFGAPTVTKDGVSVAREVELENKFENMGAQLLKEVATKTNDVAGDGTTTATVLAYSMVKEGLKAVAAGMTPLELKRGIDKAVAIAVEDIQKNSKEIK 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 37/127 (29.13%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            +A++A       VA  ++ +LGPKG + +++   G  TITNDG +I ++++++++     A+L+ E++   +   GDGTT   V+A +++++  K +  G +PI +  G + A   AVE ++++++K
Sbjct:   10 EARRALERGVDKVANAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVERAVEEIKKLSKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_FUSNP (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. polymorphum GN=groL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 39/129 (30.23%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A+K        +A  ++ +LGP+G + +L+   G   ITNDG TI ++++++    N  A L+ E++   +   GDGTT   ++A +++++  K+L  G +PI + +G E+A++ A++ L+  A+K E
Sbjct:   10 EARKKLEIGVNTLADAVKVTLGPRGRNVVLEKSYGAPLITNDGVTIAKEIELEDPFENMGAALVKEVAIKSNDVAGDGTTTATILAQAIVKEGLKMLSAGANPIFLKKGIELAAKEAIDVLKDKAKKIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_XANOR (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++   +   GDGTT   V+A +L+ +  K +  G++P+ +  G + A + AV  L+ I++
Sbjct:    9 GEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISK 136          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH602_VIBCH1.043e-1129.3260 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE... [more]
CH602_ECOK11.043e-1129.6960 kDa chaperonin 2 OS=Escherichia coli O1:K1 / AP... [more]
CH601_VIBC31.043e-1129.3260 kDa chaperonin 1 OS=Vibrio cholerae serotype O1... [more]
CH601_ANADF1.043e-1128.8060 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strai... [more]
CH60_UNCTG1.363e-1133.0760 kDa chaperonin OS=Uncultured termite group 1 ba... [more]
CH60_TSUPA1.363e-1132.2060 kDa chaperonin OS=Tsukamurella paurometabola GN... [more]
CH60_TREDE1.363e-1125.7460 kDa chaperonin OS=Treponema denticola GN=groL P... [more]
CH60_THENE1.363e-1129.1360 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_FUSNP1.363e-1130.2360 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH60_XANOR1.780e-1128.9160 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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