FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRR6 (60 kDa chaperonin OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPS (60 kDa chaperonin OS=Streptococcus pneumoniae (strain CGSP14) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPN (60 kDa chaperonin OS=Streptococcus pneumoniae GN=groL PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPJ (60 kDa chaperonin OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRPI (60 kDa chaperonin OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRP7 (60 kDa chaperonin OS=Streptococcus pneumoniae (strain 70585) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRP4 (60 kDa chaperonin OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRP2 (60 kDa chaperonin OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVAAAVEALKNNA 134
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STACT (60 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 39/129 (30.23%), Postives = 74/129 (57.36%), Query Frame = 3 
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA+++ +     +A  ++ ++GPKG + +L    G   ITNDG TI ++++++    N  AKL+ E++   +   GDGTT   V+A +++++  K +  G +P+ + +G + A   AV+ L   +QK E
Sbjct:   10 DARQSMLRGVDQLANAVKVTIGPKGRNVVLDKEYGAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRKGIDKAVTEAVKSLHEQSQKVE 138
[Close]
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOPE (60 kDa chaperonin OS=Clostridium perfringens GN=groL PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 40/133 (30.08%), Postives = 76/133 (57.14%), Query Frame = 3 
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            K+ L G +A+++  +    +A  ++ +LGPKG + +L    G   ITNDG TI  +++++    N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI I  G + A   AVE +++I++
Sbjct:    3 KTLLFGEEARRSMQAGVDKLANTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRNGIKTAVEKAVEEIQKISK 135
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_STRR61.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae (str... [more]
CH60_STRPS1.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae (str... [more]
CH60_STRPN1.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae GN=g... [more]
CH60_STRPJ1.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae (str... [more]
CH60_STRPI1.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae (str... [more]
CH60_STRP71.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae (str... [more]
CH60_STRP41.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae sero... [more]
CH60_STRP21.780e-1134.4060 kDa chaperonin OS=Streptococcus pneumoniae sero... [more]
CH60_STACT1.780e-1130.2360 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH60_CLOPE1.780e-1130.0860 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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