FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOP1 (60 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 40/133 (30.08%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            K+ L G +A+++  +    +A  ++ +LGPKG + +L    G   ITNDG TI  +++++    N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI I  G + A   AVE +++I++
Sbjct:    3 KTLLFGEEARRSMQAGVDKLANTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRNGIKTAVEKAVEEIQKISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BRECH (60 kDa chaperonin OS=Brevibacillus choshinensis GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 40/129 (31.01%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA ++ +   + +   ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  A+L+ E++   +   GDGTT   V+A +++ +  K +  G +P+ I  G E A   AVE ++ IA+  E
Sbjct:   10 DAPRSMLRGVETLPNAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIPKEIELEDAYENMGAQLVKEVATKTNGIAGDGTTTATVLAAAMIREGLKNVAAGANPMVIRRGMEKAVGAAVEEIKSIAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORRA (60 kDa chaperonin OS=Borrelia recurrentis (strain A1) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 37/127 (29.13%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G   +T DG ++  ++D++N      A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G + A  +A E + + A+K
Sbjct:   10 DARKSLLSGIEKLSNAVKVTLGPKGRNVLIDKKFGSPIVTKDGVSVAREIDLENSFENMGAQLLKEVAIKTNDLAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVALAAEKIRKSAKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BORDL (60 kDa chaperonin OS=Borrelia duttonii (strain Ly) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 37/127 (29.13%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+K+ +S  + ++  ++ +LGPKG + ++    G   +T DG ++  ++D++N      A+L+ E++   +   GDGTT   V+A ++  +  K +  GI+PI I +G + A  +A E + + A+K
Sbjct:   10 DARKSLLSGIEKLSNAVKVTLGPKGRNVLIDKKFGSPIVTKDGVSVAREIDLENSFENMGAQLLKEVAIKTNDLAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVALAAEKIRKSAKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BIFAS (60 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) GN=groL PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 42/129 (32.56%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++  ++    +A  ++ +LGPKG + +L    G  TITNDG +I +++D+++      A+L+ E+++  D   GDGTT   V+A SL+ +  K +  G +PI +  G E AS   V+ L   A+  E
Sbjct:   10 EARQGMLAGLDKLADTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPFERIGAELVKEVAKRTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKASDALVKQLVASAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BIFA0 (60 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=groL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 42/129 (32.56%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++  ++    +A  ++ +LGPKG + +L    G  TITNDG +I +++D+++      A+L+ E+++  D   GDGTT   V+A SL+ +  K +  G +PI +  G E AS   V+ L   A+  E
Sbjct:   10 EARQGMLAGLDKLADTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPFERIGAELVKEVAKRTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKASDALVKQLVASAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_SORC5 (60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 37/128 (28.91%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            ++ ++ + AG  A+A  ++ +LGPKG + +++   G  T+T DG T+ ++++++N+     A+++ E++       GDGTT   V+A ++  +  KL+  G +P+ I  G + A    VEHL   A++
Sbjct:   10 ESARSMILAGVNALADAVKVTLGPKGRNVVIEKSFGSPTVTKDGVTVAKEIELENRFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIYREGSKLVAAGHNPMEIKRGIDKAVEAIVEHLRGSAKQ 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_ROSCS (60 kDa chaperonin 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=groL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 37/125 (29.60%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            +A++A       VA  ++T+LGP+G +  +    G  T+T+DG T+ +++++    +N  A+L+VE++   +  +GDGTT   V+A S++ +  K++  G +P+ I  G + A    V  L+ +A
Sbjct:   10 EARRALKRGVDIVADAVKTTLGPRGRNVSIDKKFGAPTVTHDGVTVAKEIELKDPFENMGARLLVEVATKTNDVVGDGTTTATVLAQSIVNEGLKMVAAGANPMLIKRGLDKAVEAVVAELKSVA 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_XANCP (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++   +   GDGTT   V+A +L+ +  K +  G++P+ +  G + A + AV  L+ I++
Sbjct:    9 GEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_XANC8 (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain 8004) GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++   +   GDGTT   V+A +L+ +  K +  G++P+ +  G + A + AV  L+ I++
Sbjct:    9 GEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISK 136          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_CLOP11.780e-1130.0860 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH60_BRECH1.780e-1131.0160 kDa chaperonin OS=Brevibacillus choshinensis GN... [more]
CH60_BORRA1.780e-1129.1360 kDa chaperonin OS=Borrelia recurrentis (strain ... [more]
CH60_BORDL1.780e-1129.1360 kDa chaperonin OS=Borrelia duttonii (strain Ly)... [more]
CH60_BIFAS1.780e-1132.5660 kDa chaperonin OS=Bifidobacterium animalis subs... [more]
CH60_BIFA01.780e-1132.5660 kDa chaperonin OS=Bifidobacterium animalis subs... [more]
CH602_SORC51.780e-1128.9160 kDa chaperonin 2 OS=Sorangium cellulosum (strai... [more]
CH601_ROSCS1.780e-1129.6060 kDa chaperonin 1 OS=Roseiflexus castenholzii (s... [more]
CH60_XANCP2.324e-1128.9160 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANC82.324e-1128.9160 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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