FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRMK (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain K279a) GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++   + + GDGTT   V+A +L+ +  K +  G++P+ +  G + A   AV  L+ I++
Sbjct:    9 GEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVSAAVAELKNISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRCV (60 kDa chaperonin OS=Streptococcus constellatus GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVATAVEALK 131          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRAP (60 kDa chaperonin OS=Streptococcus anginosus GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVATAVEALK 131          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_SCAIO (60 kDa chaperonin OS=Scardovia inopinata GN=groL PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 41/129 (31.78%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAK----LMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A++  +     +A  ++ +LGP+G + +L    G  TITNDG +I +++D+++  A+    L+ E+++  D   GDGTT   V+A SL+ +  + +  G +PI +  G E AS   VE L   A+  E
Sbjct:   10 EARQGMLEGLDELANTVKVTLGPRGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYARIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLRNVTAGSNPIALRRGIEKASDAIVERLLSNAKPVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PSYWF (60 kDa chaperonin OS=Psychrobacter sp. (strain PRwf-1) GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 36/127 (28.35%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+DA+K  +     +A  ++ +LGPKG + ++    G   IT DG ++ ++++++N+     A+L+ E++   +   GDGTT   V+A ++L +  K +  G++P+ +  G + A   AVE +  I+
Sbjct:    8 GIDARKQMMDGVNVLANAVKVTLGPKGRNVVIDKSFGAPAITKDGVSVAKEIELENKFENMGAQLVREVASKTNDVAGDGTTTATVLAQAILVEGMKSVAAGMNPMDLKRGIDKAVAAAVEEIHNIS 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 39/136 (28.68%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            KS L G ++++A  +    +A  ++ +LGPKG + +L    G   ITNDG TI +++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ I +G ++A   AVE +++ +++ +
Sbjct:    3 KSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVD 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 35/127 (27.56%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+   +     +A  ++ +LGPKG + +++   G   IT DG T+ +++++    +N  A+++ E++  Q+ + GDGTT   V+A +++ +  K +  G++P+ +  G ++A +  V+ LE  A+K
Sbjct:   11 DARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGSKAVAAGMNPMDVKRGIDLAVKAVVKDLETHAKK 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 36/117 (30.77%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  228 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A ++  +LGPKG + +L+S  G   I NDG T+ +++++++ +    AKL+ + +   +   GDGTT  VV+A  L+ +  K++  G +P+ I  G E  S+  V  L++++++ E
Sbjct:   72 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVE 188          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_XANCB (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain B100) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++   +   GDGTT   V+A +L+ +  K +  G++P+ +  G + A + AV  L+ I++
Sbjct:    9 GEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            DA+ + V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+
Sbjct:   10 DARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVEALK 131          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_STRMK2.324e-1128.9160 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_STRCV2.324e-1134.4360 kDa chaperonin OS=Streptococcus constellatus GN... [more]
CH60_STRAP2.324e-1134.4360 kDa chaperonin OS=Streptococcus anginosus GN=gr... [more]
CH60_SCAIO2.324e-1131.7860 kDa chaperonin OS=Scardovia inopinata GN=groL P... [more]
CH60_PSYWF2.324e-1128.3560 kDa chaperonin OS=Psychrobacter sp. (strain PRw... [more]
CH60_CLOBO2.324e-1128.6860 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH602_SPHAL2.324e-1127.5660 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
RUBB_PEA3.035e-1130.77RuBisCO large subunit-binding protein subunit beta... [more]
CH60_XANCB3.035e-1128.9160 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_STRSV3.035e-1133.6160 kDa chaperonin OS=Streptococcus sanguinis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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