FC875400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRMK (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain K279a) GN=groL PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3 Query: 186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 G DA+ V +A ++ +LGPKG + +L+ G TIT DG ++ +++++ +N A+++ E++ + + GDGTT V+A +L+ + K + G++P+ + G + A AV L+ I++ Sbjct: 9 GEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVSAAVAELKNISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRCV (60 kDa chaperonin OS=Streptococcus constellatus GN=groL PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545 DA+ A V +A ++ +LGPKG + +L+ G ITNDG TI +++++ +N AKL+ E++ + GDGTT V+ +++ + K + G +PI I G E A AVE L+ Sbjct: 10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVATAVEALK 131
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRAP (60 kDa chaperonin OS=Streptococcus anginosus GN=groL PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545 DA+ A V +A ++ +LGPKG + +L+ G ITNDG TI +++++ +N AKL+ E++ + GDGTT V+ +++ + K + G +PI I G E A AVE L+ Sbjct: 10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIETAVATAVEALK 131
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_SCAIO (60 kDa chaperonin OS=Scardovia inopinata GN=groL PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 41/129 (31.78%), Postives = 72/129 (55.81%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAK----LMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 +A++ + +A ++ +LGP+G + +L G TITNDG +I +++D+++ A+ L+ E+++ D GDGTT V+A SL+ + + + G +PI + G E AS VE L A+ E Sbjct: 10 EARQGMLEGLDELANTVKVTLGPRGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYARIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLRNVTAGSNPIALRRGIEKASDAIVERLLSNAKPVE 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PSYWF (60 kDa chaperonin OS=Psychrobacter sp. (strain PRwf-1) GN=groL PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 36/127 (28.35%), Postives = 72/127 (56.69%), Query Frame = 3 Query: 186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 G+DA+K + +A ++ +LGPKG + ++ G IT DG ++ ++++++N+ A+L+ E++ + GDGTT V+A ++L + K + G++P+ + G + A AVE + I+ Sbjct: 8 GIDARKQMMDGVNVLANAVKVTLGPKGRNVVIDKSFGAPAITKDGVSVAKEIELENKFENMGAQLVREVASKTNDVAGDGTTTATVLAQAILVEGMKSVAAGMNPMDLKRGIDKAVAAAVEEIHNIS 134
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 39/136 (28.68%), Postives = 80/136 (58.82%), Query Frame = 3 Query: 171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 KS L G ++++A + +A ++ +LGPKG + +L G ITNDG TI +++++ +N A+L+ E++ + GDGTT ++A +++ + K + G +P+ I +G ++A AVE +++ +++ + Sbjct: 3 KSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVD 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 35/127 (27.56%), Postives = 74/127 (58.27%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560 DA+ + +A ++ +LGPKG + +++ G IT DG T+ +++++ +N A+++ E++ Q+ + GDGTT V+A +++ + K + G++P+ + G ++A + V+ LE A+K Sbjct: 11 DARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGSKAVAAGMNPMDVKRGIDLAVKAVVKDLETHAKK 137
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11 Identity = 36/117 (30.77%), Postives = 70/117 (59.83%), Query Frame = 3 Query: 228 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 +A ++ +LGPKG + +L+S G I NDG T+ +++++++ + AKL+ + + + GDGTT VV+A L+ + K++ G +P+ I G E S+ V L++++++ E Sbjct: 72 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVE 188
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_XANCB (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain B100) GN=groL PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11 Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3 Query: 186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 G DA+ V +A ++ +LGPKG + +L+ G TIT DG ++ +++++ +N A+++ E++ + GDGTT V+A +L+ + K + G++P+ + G + A + AV L+ I++ Sbjct: 9 GEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11 Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545 DA+ + V +A ++ +LGPKG + +L+ G ITNDG TI +++++ +N AKL+ E++ + GDGTT V+ +++ + K + G +PI I G E A AVE L+ Sbjct: 10 DARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVEALK 131 The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 406
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bpback to top |