FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRSA (60 kDa chaperonin OS=Streptococcus sanguis GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            DA+ + V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AVE L+
Sbjct:   10 DARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVEALK 131          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PEDPA (60 kDa chaperonin OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 39/127 (30.71%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+   +     +A  +++++GPKG + +L+   G  TITNDG TI + ++++    N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +P+ I  G E A+  AVE L +++ +
Sbjct:   10 DARTKMLKGVDKLADTVKSTIGPKGRNVVLEQSYGSPTITNDGVTIAKAIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATSKAVEALHKMSHE 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_OENOB (60 kDa chaperonin OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  228 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A  ++T++GPKG + +L+   G  TITNDG TI + +++D    N  AKL+ E +   +   GDGTT   V+  +++ +  K +  G +P+ I  G E A+  AV  L + + + E
Sbjct:   22 LADAVKTTIGPKGRNVVLEQSYGTPTITNDGVTIAKAVELDDHYENMGAKLVTEAASKTNDVAGDGTTTATVLTQAIVNEGLKNVTAGANPVGIRSGIEKATAAAVAGLNKNSHEVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_NITEU (60 kDa chaperonin OS=Nitrosomonas europaea GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 37/128 (28.91%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G  A++A +S    +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++       GDGTT   V+A S++++  + +  G++P+ +  G E A   AVE L+++++
Sbjct:    9 GDSARQAVISGVNVLADAVKVTLGPKGRNVVLERSYGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDTAGDGTTTATVLAQSIVKEGMRYVAAGMNPMDLKRGIEKAVTGAVEELKKLSK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_MYCGE (60 kDa chaperonin OS=Mycoplasma genitalium GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 38/134 (28.36%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD----VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            K  + G DA+   +     +A  ++ ++GPKG + +L+    +  ITNDG TI ++++    V+N  AK++   + S +   GDGTT   ++A  +  +  +++ +G +P+ I  G E AS + ++ LE+ ++K
Sbjct:    3 KELIFGKDARTRLLQGINKIANAVKVTVGPKGQNVILERKFANPLITNDGVTIAKEIELSDPVENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGIEIINKGANPVNIRRGIEDASLLIIKELEKYSKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOK5 (60 kDa chaperonin OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 40/133 (30.08%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L   DA+K        +A  ++ +LGPKG + +L    G   ITNDG TI +++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ I +G ++A   AVE ++++++
Sbjct:    3 KSILFSEDARKKMQEGVDKLANTVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEEPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRQGIKIAVDKAVEEIKKVSR 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOK1 (60 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 40/133 (30.08%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L   DA+K        +A  ++ +LGPKG + +L    G   ITNDG TI +++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ I +G ++A   AVE ++++++
Sbjct:    3 KSILFSEDARKKMQEGVDKLANTVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEEPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRQGIKIAVDKAVEEIKKVSR 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD----VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            DA++A      A+A  ++ +LGPKG + +L+   G   I NDG +I  +++    V+N  A+L+ E++   +   GDGTT   V+A +++ +  K +  G +P+ + +G E A   AVE ++ IA+  E
Sbjct:   11 DARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIAREIELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKGIEKAVAKAVEEIKAIAKPVE 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_ANADE (60 kDa chaperonin 1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 36/124 (29.03%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            A++A +   + +A  +  +LGPKG + +++   G  TIT DG T+ +++++    +N  A+++ E++     + GDGTT   V+A S+ E+  KL+  G +P+ +  G + A  + V HL+ ++
Sbjct:   12 AREAILRGVQTLAEAVAVTLGPKGRNVVIEKSYGAPTITKDGVTVAKEIELESKFENMGAQMVKEVASQTSDKAGDGTTTATVLARSIYEEGLKLVAAGHNPMDLKRGIDRAVEVVVAHLKSLS 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRM5 (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain R551-3) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G DA+   V     +A  ++ +LGPKG + +L+   G  TIT DG ++ +++++    +N  A+++ E++   + + GDGTT   V+A +L+ +  K +  G++P+ +  G + A   AV  L+ I++
Sbjct:    9 GEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVVAAVNELKSISK 136          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_STRSA3.035e-1133.6160 kDa chaperonin OS=Streptococcus sanguis GN=groL... [more]
CH60_PEDPA3.035e-1130.7160 kDa chaperonin OS=Pediococcus pentosaceus (stra... [more]
CH60_OENOB3.035e-1133.3360 kDa chaperonin OS=Oenococcus oeni (strain BAA-3... [more]
CH60_NITEU3.035e-1128.9160 kDa chaperonin OS=Nitrosomonas europaea GN=groL... [more]
CH60_MYCGE3.035e-1128.3660 kDa chaperonin OS=Mycoplasma genitalium GN=groL... [more]
CH60_CLOK53.035e-1130.0860 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH60_CLOK13.035e-1130.0860 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH60_CARHZ3.035e-1131.7860 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH601_ANADE3.035e-1129.0360 kDa chaperonin 1 OS=Anaeromyxobacter dehalogena... [more]
CH60_STRM53.964e-1128.9160 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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