FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRGN (60 kDa chaperonin OS=Streptococcus gordonii GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AV  L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVSALKETA 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_STRGC (60 kDa chaperonin OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            DA+ A V     +A  ++ +LGPKG + +L+   G   ITNDG TI +++++    +N  AKL+ E++   +   GDGTT   V+  +++ +  K +  G +PI I  G E A   AV  L+  A
Sbjct:   10 DARSAMVRGVDILADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVSALKETA 134          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_RALSO (60 kDa chaperonin OS=Ralstonia solanacearum GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 36/127 (28.35%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L++I++
Sbjct:   10 DAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVAAGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_RALEJ (60 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L+++++
Sbjct:   10 DAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVAAAVEELKKVSK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_RALEH (60 kDa chaperonin OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L+++++
Sbjct:   10 DAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVAAAVEELKKVSK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 37/127 (29.13%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            +A+K   +    ++  ++ +LGPKG + +++   G   ITNDG TI +++++    +N  A+L+ E++   +   GDGTT   V+A +++++  K++  G +P+ +  G E A++ AV  LE  ++K
Sbjct:   10 EARKKLENGVDVLSNTVKVTLGPKGRNVVIEKSYGSPLITNDGVTIAKEIELEDPFENMGAQLIKEVATKANDVAGDGTTTATVLAQAMVKEGLKMITAGSNPVFVKRGIEKATKKAVSILETKSKK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_LYSSC (60 kDa chaperonin OS=Lysinibacillus sphaericus (strain C3-41) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 38/126 (30.16%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+   +     +A  ++ +LGPKG + +L+   G   ITNDG TI ++++++N      AKL+ E++   +   GDGTT   V+A +++ +  K +  G +P+ I +G + A   A+  L  I++
Sbjct:   10 DARSLMLQGVDKLANAVKITLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPYENMGAKLVAEVASKTNEIAGDGTTTATVLAQAIIREGLKNVTAGANPVGIRKGIDKAVAAALTELHTISR 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 36/127 (28.35%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L++I++
Sbjct:   10 DAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVGAAVEELKKISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 39/136 (28.68%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            KS L G ++++A  +    +A  ++ +LGPKG + +L    G   ITNDG TI +++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ I +G ++A   AVE +++ +++ +
Sbjct:    3 KSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGAPLITNDGVTIAKEIELEDMYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVD 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBM (60 kDa chaperonin OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_STRGN3.964e-1133.6060 kDa chaperonin OS=Streptococcus gordonii GN=gro... [more]
CH60_STRGC3.964e-1133.6060 kDa chaperonin OS=Streptococcus gordonii (strai... [more]
CH60_RALSO3.964e-1128.3560 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH60_RALEJ3.964e-1127.5660 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH60_RALEH3.964e-1127.5660 kDa chaperonin OS=Ralstonia eutropha (strain AT... [more]
CH60_METVS3.964e-1129.1360 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_LYSSC3.964e-1130.1660 kDa chaperonin OS=Lysinibacillus sphaericus (st... [more]
CH60_CUPTR3.964e-1128.3560 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH60_CLONN3.964e-1128.6860 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH60_CLOBM3.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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