FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBL (60 kDa chaperonin OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBK (60 kDa chaperonin OS=Clostridium botulinum (strain Okra / Type B1) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBJ (60 kDa chaperonin OS=Clostridium botulinum (strain Kyoto / Type A2) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOBH (60 kDa chaperonin OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOB6 (60 kDa chaperonin OS=Clostridium botulinum (strain 657 / Type Ba4) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOB1 (60 kDa chaperonin OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            KS L G  A+++  +    +A  +R +LGPKG + +L    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +PI+I  G   A   AVE ++ I++
Sbjct:    3 KSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLAMS (60 kDa chaperonin OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  228 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A  +R +LGP+G + +L+   G  TITNDG +I +++++D+      A+L+ E+++  D   GDGTT   V+A +L+ +  + +  G  PI +  G E A     E L+  A++ E
Sbjct:   22 LADAVRVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELDDPFEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGADPISLKRGIEKAVAAVTEELKAAAKEIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLAM3 (60 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  228 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A  +R +LGP+G + +L+   G  TITNDG +I +++++D+      A+L+ E+++  D   GDGTT   V+A +L+ +  + +  G  PI +  G E A     E L+  A++ E
Sbjct:   22 LADAVRVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELDDPFEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGADPISLKRGIEKAVAAVTEELKAAAKEIE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH603_RHOBA (60 kDa chaperonin 3 OS=Rhodopirellula baltica GN=groL3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 39/127 (30.71%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            +A++A       +AR ++ +LGPKG + +LQ   G  T+T DG T+ +++++    +N  A ++ E++       GDGTT   VMA ++  +  K +  G++PI++  G E A     E L  +A K
Sbjct:   10 EAREAIRRGVSKLARTVKVTLGPKGRNVILQKSFGSPTVTKDGVTVAKEIELEDPYENMGASMVREVASKTSDVAGDGTTTATVMAEAIFNEGLKAVVAGVNPIQMKSGIETAVSDITEQLHSMAVK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 36/125 (28.80%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            A+ A +     +A  ++ +LGPKG + +++   G  TIT DG T+ ++++++N+     A+++ E++       GDGTT   V+A +L  +  KL+  G +P+ I  G + A  I V  L+++++
Sbjct:   12 ARDAILKGVNTLADAVKVTLGPKGRNVVIEKSFGSPTITKDGVTVAKEIELENKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQALYREGSKLVAAGHNPMEIKRGIDKAVEIIVGELKKLSK 136          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_CLOBL3.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBK3.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBJ3.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBH3.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOB63.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOB13.964e-1131.5860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLAMS3.964e-1132.4860 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH60_CLAM33.964e-1132.4860 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH603_RHOBA3.964e-1130.7160 kDa chaperonin 3 OS=Rhodopirellula baltica GN=g... [more]
CH602_ANADF3.964e-1128.8060 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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