FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 39/127 (30.71%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA++A       VA  ++ +LGPKG + +L+   G  TITNDG +I +++++ ++     A+L+ E++   +   GDGTT   V+A +++++  K +  G +PI +  G   A+  AVE +   ++K
Sbjct:   10 DARRALERGVNTVADAVKITLGPKGRNVVLEKSWGSPTITNDGVSIAKEIELKDKFEALGAELVKEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVAAGANPILMRNGIAKATDKAVEQIRNASRK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 34/120 (28.33%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  195 AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            A++A ++  + +A  +  +LGP+G + +++   G  T+T DG T+ +++++    +N  A+++ E++       GDGTT   V+A ++ E+ +KL+  G +P+ I  G + A  +AV+ L
Sbjct:   12 AREAMLAGVRTLADAVAVTLGPRGRNVVIEKSWGSPTVTKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDTAGDGTTTATVLARAIYEEGQKLVAAGNNPMAIKRGIDKACEVAVKEL 131          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BDEBA (60 kDa chaperonin OS=Bdellovibrio bacteriovorus GN=groL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 35/126 (27.78%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA+   +     +A  ++ +LGPKG + ++    G   IT DG T+ ++++++N+     A+++ E++   + E GDGTT   V+A ++  +  KL+  G +P+ I  G + A  I +E L+ +++
Sbjct:   10 DARTHILKGVNTLANAVKVTLGPKGRNVVIDKSFGSPLITKDGVTVAKEIELENKFENMGAQMVKEVASKTNDEAGDGTTTATVLAQAIYREGAKLVSAGHNPMSIKRGIDKAVGIIIEELKSMSK 135          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 36/127 (28.35%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            DA+   +     +A  ++ +LGPKG + +++   G   IT DG T+ +++++    +N  A+++ E++  Q+ + GDGTT   V+A +++ +  K +  G++PI +  G ++A    V+ LE  A+K
Sbjct:   11 DARDRMLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELKDKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGAKAVAAGMNPIDLKRGIDLAVGTVVKDLESHAKK 137          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_RALME (60 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3
Query:  192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            DA +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L+++++
Sbjct:   10 DAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVGAAVEELKKLSK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_HAHCH (60 kDa chaperonin OS=Hahella chejuensis (strain KCTC 2396) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 37/131 (28.24%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            G  A+K  V+    +A  ++ +LGPKG + +L    G  T+T DG ++ +++++    +N  A+++ E++   + E GDGTT   V+A ++L +  K +  G++P+ +  G + A   AV+ ++ I++  E
Sbjct:    9 GDSARKRMVAGVNTLADAVKVTLGPKGRNVVLDKSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTNDEAGDGTTTATVLAQAILNEGLKSVAAGMNPMDLKRGIDKAVIAAVKEIKNISRPCE 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_DEIRA (60 kDa chaperonin OS=Deinococcus radiodurans GN=groL PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 31/118 (26.27%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  225 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            AVA  ++ +LGP+G + +++   G  TIT DG T+ +++++++++    A+L+ E++   +   GDGTT   V+  +++++  + +  G +P+ +  G + A  +A+E ++++A   E
Sbjct:   21 AVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKEVASKTNDITGDGTTTATVLGQAIVKEGLRNVAAGANPLALKRGIDKAVAVAIEEIKKLAVSVE 138          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURVI (60 kDa chaperonin OS=Burkholderia vietnamiensis GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 35/128 (27.34%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G  A+   V     +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L++I++
Sbjct:    9 GDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURCE (60 kDa chaperonin OS=Burkholderia cepacia GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 35/128 (27.34%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  186 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G  A+   V     +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   AVE L++I++
Sbjct:    9 GDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 37/129 (28.68%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +A+++  +    +A  ++ +LGPKG + ++    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ + +G + A  +AVE L+  +QK E
Sbjct:   10 EARRSLEAGVNKLADTVKVTLGPKGRNVIIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMILKKGIQKAVDVAVEELKNTSQKVE 138          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
CH60_PETMO5.178e-1130.7160 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_DESOH5.178e-1128.3360 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH60_BDEBA5.178e-1127.7860 kDa chaperonin OS=Bdellovibrio bacteriovorus GN... [more]
CH601_ERYLH5.178e-1128.3560 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH60_RALME6.762e-1127.5660 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH60_HAHCH6.762e-1128.2460 kDa chaperonin OS=Hahella chejuensis (strain KC... [more]
CH60_DEIRA6.762e-1126.2760 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]
CH60_BURVI6.762e-1127.3460 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH60_BURCE6.762e-1127.3460 kDa chaperonin OS=Burkholderia cepacia GN=groL ... [more]
CH60_ALKOO6.762e-1128.6860 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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