FC875400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 36/127 (28.35%), Postives = 72/127 (56.69%), Query Frame = 3 Query: 192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 D +A + AG +A ++ +LGP+G + +L+ G +T DG ++ +++++ +N A+L+ E++ GDGTT V+ ++ E+ K + G +PI + G + A +I VE L++I++ Sbjct: 10 DEARAKLKAGVDKLANAVKVTLGPRGREVILEKKWGSPVVTKDGVSVAKEIELTDPYENMAAQLVKEVASKTADVAGDGTTTATVLTQAIYEEGLKAIASGANPIYVKRGIDEAVKIIVEELKKISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 37/129 (28.68%), Postives = 73/129 (56.59%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 DA+ + +A +R +LGP+G + +L+ G TIT DG ++ +++++ +N A+++ E++ GDGTT V+A S+L + K + G++P+ + G + A AVE L+++++ E Sbjct: 11 DARHRMMHGVNVLADAVRVTLGPRGRNVVLEKSFGAPTITKDGVSVAKEIELKDRFENMGAQMVKEVASQTSDVAGDGTTTATVLAQSILREGMKAVAAGMNPMDLKRGVDKAVVAAVEELKKLSKPCE 139
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_HALHL (60 kDa chaperonin OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 35/121 (28.93%), Postives = 69/121 (57.02%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 DA++ +S +A ++ +LGP+G + +L+ G T+T DG ++ +++++ +N A+++ E+S GDGTT V+A ++L + K L G+ P+ + +G E A+ A +L Sbjct: 11 DARQRMMSGVNQLANAVKVTLGPRGRNAVLEKSFGAPTVTKDGVSVAKEIELEDHFENMGAQMLKEVSSQTSDVAGDGTTTATVLAQAILREGMKSLAAGMSPMELKKGIEKATEAASNYL 131
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566 +A++A A+A +R +LGPKG + +L G ITNDG TI ++++ +N A+L+ E++ + GDGTT V+A +++ + K + G +P+ I G E A VE ++ A+ E Sbjct: 10 EARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVEDIKTNAKPIE 138
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 40/125 (32.00%), Postives = 70/125 (56.00%), Query Frame = 3 Query: 192 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 DA+ A + +A +R +LGPKG + +L G ITNDG TI +++++ +N A+L+ E++ + GDGTT V+A +++ + K L G +PI + G + A+ AVE + ++ Sbjct: 10 DARVAMEAGVNKLANTVRVTLGPKGRNVVLDKSFGAPLITNDGVTIAKEIELEDSFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAMINEGMKNLAAGANPIILRRGMKKATDCAVEAISSMS 134
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 D+ +A + G +A ++ +LGPKG + +L+ G T+T DG ++ +++++ +++ A+++ E++ GDGTT V+A S++ + K + G++P+ + G + A AVE L++I++ Sbjct: 10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURMS (60 kDa chaperonin OS=Burkholderia mallei (strain SAVP1) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 D+ +A + G +A ++ +LGPKG + +L+ G T+T DG ++ +++++ +++ A+++ E++ GDGTT V+A S++ + K + G++P+ + G + A AVE L++I++ Sbjct: 10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 D+ +A + G +A ++ +LGPKG + +L+ G T+T DG ++ +++++ +++ A+++ E++ GDGTT V+A S++ + K + G++P+ + G + A AVE L++I++ Sbjct: 10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 D+ +A + G +A ++ +LGPKG + +L+ G T+T DG ++ +++++ +++ A+++ E++ GDGTT V+A S++ + K + G++P+ + G + A AVE L++I++ Sbjct: 10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 35/127 (27.56%), Postives = 75/127 (59.06%), Query Frame = 3 Query: 192 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557 D+ +A + G +A ++ +LGPKG + +L+ G T+T DG ++ +++++ +++ A+++ E++ GDGTT V+A S++ + K + G++P+ + G + A AVE L++I++ Sbjct: 10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISK 136 The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 406
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bpback to top |