FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:7..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.949e-32
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIA 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.949e-32
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIA 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  E
Sbjct:   39 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEE 159          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.185e-31
Identity = 69/139 (49.64%), Postives = 98/139 (70.50%), Query Frame = 3
Query:  138 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            +P I+L   E+  R  G DAQ  N++AGKAVA  +RT+LGPKGMDKML    G+V +TNDG TIL++MD+++  A ++VE++ +Q+ E+GDGTT  VV++G LL +AE LLE+ IH   +A+GY  A+  A E L+  A
Sbjct:    8 QPLIVL--SEDSQRTSGEDAQSMNITAGKAVAESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKAKELLDDAA 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEIL 148          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  204 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEIL 148          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.641e-31
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  165 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545
            E  +R  G  AQ +N+ AGKAVA  +RT+LGP+GMDKML    G+V ITNDGATILE+MD+++  A+++VE+S++Q+ E+GDGTT   V+ G LL  AE LL+  +HP  I EGY  A+RIA + ++
Sbjct:   14 EGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAID 140          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 67/142 (47.18%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            P +LL++  ++S   G DA K N+ A   +A +L++SLGP+G+DKML    GDVTITNDGATI+++M++ +  AKL+VE +++QD E+GDGTT  VV+AG LL++A+ LL++ IHP  I EGY+ A   ++E ++++A K +
Sbjct:    5 PVLLLKEGTQRSS--GRDALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKID 144          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 68/130 (52.31%), Postives = 97/130 (74.62%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  GD+ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV+M G+LL  AEKLL +GIHP  IAE ++ A+  +VE L  ++ K
Sbjct:   14 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTK 143          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 65/135 (48.15%), Postives = 100/135 (74.07%), Query Frame = 3
Query:  162 QEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            +E  SR  G DA + N+ A   +A +L++SLGP+G+DKML    GDVTITNDGATI+++M++ +  AKL+VE +++QD E+GDGTT  VV+AG LL++AE+LLE+ +HP  I +GY+ A   A+E +++++ K +
Sbjct:    9 KEGTSRSSGRDALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKID 143          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
THSA_THEK16.949e-3250.00Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO6.949e-3250.00Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPD_BOVIN9.076e-3257.02T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
THSA_HALSA1.185e-3149.64Thermosome subunit alpha OS=Halobacterium salinari... [more]
TCPD_RAT2.022e-3160.18T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE2.022e-3160.18T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THS3_HALVO2.641e-3151.97Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
THSA_SULTO3.449e-3147.18Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
TCPD_KLULA3.449e-3152.31T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THSA_SULAC7.683e-3148.15Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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