FC875400

Overview
NameFC875400
Unique NameFC875400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:7..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 63/139 (45.32%), Postives = 100/139 (71.94%), Query Frame = 3
Query:  138 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554
            +P ++L   E   R  G DAQ+ N+ AG+ +   +R++LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ +HP  + +GY++A + A E L+ IA
Sbjct:    5 QPVVVL--PENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIA 141          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.718e-30
Identity = 64/132 (48.48%), Postives = 95/132 (71.97%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            + R +  + + +N+ A ++VA  +RTSLGPKGMDKM+Q+  G+V +TNDGATIL+ + V +  AK++V+LS +QD E GDGTT VV++AGS+L  AEKLL++GIHP  IAE ++ A+   V+ ++  A   E
Sbjct:   12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143          

HSP 2 Score: 25.0238 bits (53), Expect = 2.718e-30
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 2
Query:  608 TTLNSKMVNRXQRRLAEDCCQAVLAVADLERKGCHLDL 721
            T+LNSK+V++    LA     AVL V D  R   ++DL
Sbjct:  156 TSLNSKIVSQYSNLLAPIAVDAVLKVID-PRVATNVDL 192          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 66/124 (53.23%), Postives = 94/124 (75.81%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV++ G+LL  AEKLL +GIHP  IAE ++ A + AVE L
Sbjct:   13 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVL 136          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 61/130 (46.92%), Postives = 95/130 (73.08%), Query Frame = 3
Query:  177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 566
            R  G DA + N+ A +A++ +++T+ GPKGMDKML    GDVTITNDGATIL++ ++ +  AK++V++++SQD E+GDGT   V++AG LL+ AE+LL++ IHP  I  GY MA   A++ L+++A+  +
Sbjct:    2 RTTGRDALRTNILAARAISEMIKTTYGPKGMDKMLVDALGDVTITNDGATILDKAEIQHPAAKMLVQVAKSQDSEVGDGTKRAVILAGELLKYAEELLDKNIHPTVIISGYRMAMEEALKILDQMAEPID 131          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 67/142 (47.18%), Postives = 99/142 (69.72%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G P I+L+  E  SR  G +A + N++A KAV   L+++ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V++AG L+++AE+LL + IHP  I  G++ A   A++ +E IAQK
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQK 152          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 66/142 (46.48%), Postives = 98/142 (69.01%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK 560
            G P I+L+  E  SR  G +A + N++A KAV   L+T+ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V+ +G L+++AE+LL + IHP  I  GY+ A  +A++ +E I+ K
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEISTK 152          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 66/122 (54.10%), Postives = 92/122 (75.41%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVE 536
            K++ + L+ +K+N+ A +AVA  +RTSLGPKGMDKM+Q+  G V I+NDG TIL+ M V +  AK++V+LS SQD   GDGTT VV++AGSLL  A+KLL++GIHP  IAE ++ A++ A E
Sbjct:   12 KNKEKPLEVRKSNILAARAVADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAE 133          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.892e-29
Identity = 66/141 (46.81%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G P I+L+  E  SR  G +A +AN++A KA+   L+++ GP+GMDKML    GD+TITNDGATIL++MD+ +   KL+V++++ QD E  DGT   V++AG L ++AE LL + IHP  I  GY+ A  IA++ ++ IAQ
Sbjct:   12 GIPVIILK--EGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQEIAQ 150          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.216e-29
Identity = 62/127 (48.82%), Postives = 96/127 (75.59%), Query Frame = 3
Query:  171 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI 551
            K++ +  + ++AN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++V++S +QD E GDGTT VV++ G+LL  A++LL +GIHP  IAE ++ A+R +VE L  I
Sbjct:   13 KNKEKPQEVRRANIVAARAVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVDVSAAQDSEAGDGTTSVVILTGALLGAADRLLNKGIHPTIIAESFQKAARRSVETLLEI 139          
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.392e-29
Identity = 65/141 (46.10%), Postives = 96/141 (68.09%), Query Frame = 3
Query:  135 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ 557
            G P I+L+  E  SR  G +A +AN++A KA+   L+++ GP+GMDKM     GD+TITNDGATIL++MD+ +   KL+V++++ QD E  DGT   V++AG L ++AE LL + IHP  I  GY+ A  IA++ ++ IAQ
Sbjct:   12 GIPVIILK--EGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQ 150          
The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
THS_METTL1.311e-3045.32Thermosome subunit OS=Methanococcus thermolithotro... [more]
TCPD_SCHPO2.718e-3048.48T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_ASHGO2.920e-3053.23T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
THSB_DESMO6.504e-3046.92Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THSB_SULTO1.449e-2947.18Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSB_SULAC1.449e-2946.48Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
TCPD_YARLI1.449e-2954.10T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
THSB_SULSO1.892e-2946.81Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
TCPD_CANGA4.216e-2948.82T-complex protein 1 subunit delta OS=Candida glabr... [more]
THSB_SULSH9.392e-2946.10Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31403E05EF CTVClemen1 Citrus clementina cDNA clone C31403E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bp
GTTCATTGTTCACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTT
GTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGG
ATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATAT
TATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAG
AAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTC
CCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACG
TCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGAC
AATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGA
AATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAG
AGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCA
GAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTAT
AGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAC
TTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGNCAGCGCAGAT
TGGCTGAAGATTGCTGTCAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGG
AAAGGATGTCATTTAGATTTGAT
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