FC875400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.719e-26 Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3 Query: 177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ Sbjct: 11 RSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI 132
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3 Query: 177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI 132
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3 Query: 177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 R G + NV+A +A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ +++L+++ IHP I GY +A + AV ++ Sbjct: 14 RSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYI 135
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3 Query: 177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI 132
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3 Query: 177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI 132
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 3 Query: 177 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 542 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI 132
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25 Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 3 Query: 138 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 RP ++L Q ++ G Q N++A K +A I+RT LGPK M KML P G + +TNDG IL ++ V + AK MVE+SR+QD E+GDGTT V+++AG +L AE LE+ +HP + Y A + L++I+ Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMVEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS 141
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25 Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 3 Query: 138 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLE 545 +P ++L Q ++ G Q N+ AGKA+A ++RT LGP+ M KML P G + +TNDG IL ++ V + AK M+E++R+QD E+GDGTT V+V+AG +L AE L++ IHP I Y A V HL+ Sbjct: 6 QPILVLSQNTKRES--GRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQ 139
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25 Identity = 57/138 (41.30%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 P ILL++ + S+ G+ +N+SA + +A +RT+LGP+GMDK++ G TI+NDGATIL+ +DV + AK +V++++SQD E+GDGTT V ++A L+Q + +E G+HP I + A+++AV ++ IA Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIA 140
BLAST of FC875400 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25 Identity = 57/138 (41.30%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 141 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 554 P ILL++ + S+ G+ +N+SA + +A +RT+LGP+GMDK++ G TI+NDGATIL+ +DV + AK +V++++SQD E+GDGTT V ++A L+Q + +E G+HP I + A+++AV ++ IA Sbjct: 5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIA 140 The following BLAST results are available for this feature:
BLAST of FC875400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 406
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875400 ID=FC875400; Name=FC875400; organism=Citrus clementina; type=EST; length=723bpback to top |