FC875403

Overview
NameFC875403
Unique NameFC875403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:31..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 82/173 (47.40%), Postives = 101/173 (58.38%), Query Frame = 2
Query:  152 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 670
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSW 184          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.325e-37
Identity = 81/173 (46.82%), Postives = 101/173 (58.38%), Query Frame = 2
Query:  152 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEW 670
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRW 184          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 82/201 (40.80%), Postives = 113/201 (56.22%), Query Frame = 2
Query:   83 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEW 670
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQW 265          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 82/201 (40.80%), Postives = 113/201 (56.22%), Query Frame = 2
Query:   83 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEW 670
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQW 265          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 74/174 (42.53%), Postives = 94/174 (54.02%), Query Frame = 2
Query:  152 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWN 673
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +R RE+AAF AQT HETTGGW  AP G Y  G                       Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT  W+
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG-------------------STSDYFGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWS 145          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 65/182 (35.71%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  125 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEIS-PPSPYC-NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVI 658
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   R RE+AAF A     T+G   D     +AWG C I+  +   + +C + ++PC    KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIV 297          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 68/181 (37.57%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC---NLNYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFW 616
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+     REIAAFFA   HET               +C+I EI  PS  YC   +  +PC  GK YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 63/180 (35.00%), Postives = 85/180 (47.22%), Query Frame = 2
Query:   95 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 619
            G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E    REIAAFFA   HET               +C+ISEI+  + YC   N  +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 62/188 (32.98%), Postives = 88/188 (46.81%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTA 625
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++    REIAAFFA   HET               +C+ISEI+  + YC+     +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 68/191 (35.60%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 634
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    +  REIA  FA   HET               +C+I EI+  S  YC   N  YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +  P
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
The following BLAST results are available for this feature:
BLAST of FC875403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_TOBAC4.554e-3847.40Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC1.325e-3746.82Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ1.913e-3640.80Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.913e-3640.80Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA1.676e-3242.53Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI2.120e-2735.71Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ1.857e-2337.57Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE4.138e-2335.00Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE9.218e-2332.98Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA1.739e-2135.60Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC31403E08EF CTVClemen1 Citrus clementina cDNA clone C31403E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875403 ID=FC875403; Name=FC875403; organism=Citrus clementina; type=EST; length=685bp
TCATAACTGTTGCTTTCAAATGAGGCTTATTGCGTCCTTACTAGTTTTCT
CTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACGGAATTGTGGAAGC
GGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGGATGGCGGTGA
ACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATA
GAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTT
ATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAAC
CATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAA
CTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGCTTGGGGATAT
TGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAACTA
TCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGA
ATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTG
TTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACG
AAGTCATTACCGACGAATGGAACCATCAGCAATGA
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