FC875403

Overview
NameFC875403
Unique NameFC875403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:31..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 69/192 (35.94%), Postives = 87/192 (45.31%), Query Frame = 2
Query:   89 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWR-DAPGGEYAWGYCFISEISPPSPYCNLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMT 622
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+     REIAAFFA   HETT     +   G+    YC   + +         YPC    KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAA--------QYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 61/177 (34.46%), Postives = 85/177 (48.02%), Query Frame = 2
Query:   92 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 619
            CG G   G   D   G     +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  R REIAA+FA   HET           +A  YC  S+  P    CN N     +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 64/191 (33.51%), Postives = 86/191 (45.03%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCNLN---YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 619
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F          REIAAFFA   HET                C+I+EI+  S  YC+ N   +PC+   KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  215 CPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 619
            C  + FYT  +F+ AA+++  F N        REIAAFFA   HET                C+I+EI+  +  YC   N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of FC875403 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 61/183 (33.33%), Postives = 82/183 (44.81%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWM 619
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E    REIAA FA   HET               +C+I EI   S  YC+      YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of FC875403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_BETVU3.873e-2135.94Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA1.627e-1934.46Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ1.799e-1833.51Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ5.235e-1836.88Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU8.929e-1833.33Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31403E08EF CTVClemen1 Citrus clementina cDNA clone C31403E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875403 ID=FC875403; Name=FC875403; organism=Citrus clementina; type=EST; length=685bp
TCATAACTGTTGCTTTCAAATGAGGCTTATTGCGTCCTTACTAGTTTTCT
CTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACGGAATTGTGGAAGC
GGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGGATGGCGGTGA
ACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATA
GAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTT
ATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAAC
CATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAA
CTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGCTTGGGGATAT
TGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAACTA
TCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGA
ATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTG
TTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACG
AAGTCATTACCGACGAATGGAACCATCAGCAATGA
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