FC875406 | Citrus Genome Database

Overview


Name	FC875406
Unique Name	FC875406
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	741

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10325	contig	Ccv1_Contig10325:231..972.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT2_MOUSE (ADP/ATP translocase 2 OS=Mus musculus GN=Slc25a5 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 6.383e-47
Identity = 98/177 (55.37%), Postives = 116/177 (65.54%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD-RDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GGV+AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIRYFPTQALNFAFKD +K++F    D R  +W++FAGN             FVY LD+ARTRLA D    K G ER+F GL D   K  KSDGI GLY+GF   V
Sbjct:    8 FAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKAGAEREFKGLGDCLVKIYKSDGIKGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 6.383e-47
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGIYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT2_HUMAN (ADP/ATP translocase 2 OS=Homo sapiens GN=SLC25A5 PE=1 SV=6)

HSP 1 Score: 176.407 bits (446), Expect = 6.383e-47
Identity = 98/177 (55.37%), Postives = 116/177 (65.54%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD-RDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GGV+AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIRYFPTQALNFAFKD +K++F    D R  +W++FAGN             FVY LD+ARTRLA D    K G ER+F GL D   K  KSDGI GLY+GF   V
Sbjct:    8 FAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 6.383e-47
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGIYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT2_BOVIN (ADP/ATP translocase 2 OS=Bos taurus GN=SLC25A5 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 6.383e-47
Identity = 98/177 (55.37%), Postives = 116/177 (65.54%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD-RDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GGV+AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIRYFPTQALNFAFKD +K++F    D R  +W++FAGN             FVY LD+ARTRLA D    K G ER+F GL D   K  KSDGI GLY+GF   V
Sbjct:    8 FAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 6.383e-47
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGIYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT3_HUMAN (ADP/ATP translocase 3 OS=Homo sapiens GN=SLC25A6 PE=1 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 1.842e-46
Identity = 96/177 (54.24%), Postives = 117/177 (66.10%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GG++AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIRYFPTQALNFAFKD +K++F    D+   +W++FAGN             FVY LD+ARTRLA D    K G ER+F GL D   K  KSDGI GLY+GF+  V
Sbjct:    8 FAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHAS-KQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSV 181

HSP 2 Score: 31.9574 bits (71), Expect = 1.842e-46
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GII+YR  YFG+Y++ K
Sbjct:  177 FSVSVQGIIIYRAAYFGVYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT2_PONAB (ADP/ATP translocase 2 OS=Pongo abelii GN=SLC25A5 PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.400e-46
Identity = 97/177 (54.80%), Postives = 116/177 (65.54%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD-RDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GGV+AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIR+FPTQALNFAFKD +K++F    D R  +W++FAGN             FVY LD+ARTRLA D    K G ER+F GL D   K  KSDGI GLY+GF   V
Sbjct:    8 FAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRHFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 2.400e-46
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGIYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT_DROME (ADP,ATP carrier protein OS=Drosophila melanogaster GN=sesB PE=2 SV=4)

HSP 1 Score: 176.792 bits (447), Expect = 3.126e-46
Identity = 100/191 (52.36%), Postives = 124/191 (64.92%), Query Frame = 3

Query:   99 ASAICVQAPAEKGF--AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD-GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            +++I  Q+   K F   GF  DF  GG+SAAVSKTA APIERVKLL+Q Q  + K     + YKG+ DCF R  K++G  + WRGN ANVIRYFPTQALNFAFKD +K++F    D++  +W++FAGN             FVY LD+ARTRLA D     KGG+R+F GL +   K  KSDGI GLYRGF
Sbjct:    5 SASITSQSKMGKDFDAVGFVKDFAAGGISAAVSKTAVAPIERVKLLLQVQ-HISKQISPDKQYKGMVDCFIRIPKEQGFSSFWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD---TGKGGQREFTGLGNCLTKIFKSDGIVGLYRGF 191

HSP 2 Score: 30.0314 bits (66), Expect = 3.126e-46
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GII+YR  YFG Y++ +
Sbjct:  191 FGVSVQGIIIYRAAYFGFYDTAR 213

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT2_TACAC (ADP/ATP translocase 2 OS=Tachyglossus aculeatus aculeatus GN=SLC25A5 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.128e-46
Identity = 97/177 (54.80%), Postives = 115/177 (64.97%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD-RDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GGV+AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIRYFPTQALNFAFKD +K++F    D R  +W++FAGN             FVY LD+ARTRLA D    K G  R+F GL D   K  KSDGI GLY+GF   V
Sbjct:    8 FAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQITADKQYKGIMDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKAGDAREFKGLGDCLVKITKSDGIRGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 3.128e-46
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGIYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT1_RAT (ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc25a4 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.533e-45
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            F  DFL GG++AAVSKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G ++ WRGN ANVIRYFPTQALNFAFKD +K++F    DR   +W++FAGN             FVY LD+ARTRLA D    K   +R+FNGL D   K  KSDG+ GLY+GF+  V
Sbjct:    8 FLKDFLAGGIAAAVSKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGSSQREFNGLGDCLTKIFKSDGLKGLYQGFSVSV 181

HSP 2 Score: 31.9574 bits (71), Expect = 1.533e-45
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GII+YR  YFG+Y++ K
Sbjct:  177 FSVSVQGIIIYRAAYFGVYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT1_MOUSE (ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4)

HSP 1 Score: 172.555 bits (436), Expect = 1.533e-45
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            F  DFL GG++AAVSKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G ++ WRGN ANVIRYFPTQALNFAFKD +K++F    DR   +W++FAGN             FVY LD+ARTRLA D    K   +R+FNGL D   K  KSDG+ GLY+GF+  V
Sbjct:    8 FLKDFLAGGIAAAVSKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGSSQREFNGLGDCLTKIFKSDGLKGLYQGFSVSV 181

HSP 2 Score: 31.9574 bits (71), Expect = 1.533e-45
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GII+YR  YFG+Y++ K
Sbjct:  177 FSVSVQGIIIYRAAYFGVYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT3_PIG (ADP/ATP translocase 3 OS=Sus scrofa GN=SLC25A6 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.997e-45
Identity = 95/177 (53.67%), Postives = 115/177 (64.97%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            FA DFL GG++AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G+++ WRGN ANVIRYFPTQALNFAFKD +K++F    D+   +W++FAGN             FVY LD+ARTRLA D    K   ER+F GL D   K  KSDGI GLY+GF   V
Sbjct:    8 FAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHAS-KQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSV 181

HSP 2 Score: 31.187 bits (69), Expect = 1.997e-45
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y + K
Sbjct:  177 FNVSVQGIIIYRAAYFGVYGTAK 199

The following BLAST results are available for this feature:

BLAST of FC875406 vs. ExPASy Swiss-Prot

BLAST of FC875406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
ADT2_MOUSE	6.383e-47	55.37	ADP/ATP translocase 2 OS=Mus musculus GN=Slc25a5 P...	[more]
ADT2_HUMAN	6.383e-47	55.37	ADP/ATP translocase 2 OS=Homo sapiens GN=SLC25A5 P...	[more]
ADT2_BOVIN	6.383e-47	55.37	ADP/ATP translocase 2 OS=Bos taurus GN=SLC25A5 PE=...	[more]
ADT3_HUMAN	1.842e-46	54.24	ADP/ATP translocase 3 OS=Homo sapiens GN=SLC25A6 P...	[more]
ADT2_PONAB	2.400e-46	54.80	ADP/ATP translocase 2 OS=Pongo abelii GN=SLC25A5 P...	[more]
ADT_DROME	3.126e-46	52.36	ADP,ATP carrier protein OS=Drosophila melanogaster...	[more]
ADT2_TACAC	3.128e-46	54.80	ADP/ATP translocase 2 OS=Tachyglossus aculeatus ac...	[more]
ADT1_RAT	1.533e-45	53.67	ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc2...	[more]
ADT1_MOUSE	1.533e-45	53.67	ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 P...	[more]
ADT3_PIG	1.997e-45	53.67	ADP/ATP translocase 3 OS=Sus scrofa GN=SLC25A6 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31403E12EF CTVClemen1 Citrus clementina cDNA clone C31403E12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875406 ID=FC875406; Name=FC875406; organism=Citrus clementina; type=EST; length=741bp
ACCAAAGACGTGGTGCTTATGGGAACTACTCCAATGCTGCATTCCAATAC
CCCATAGTCAGTGCAGCTACTACCGATCTATCTATGGTGCCGTCAACTGC
ATCTGCTATTTGCGTCCAAGCCCCAGCTGAGAAAGGCTTTGCAGGCTTTG
CTATCGATTTCCTTATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCT
GCTGCTCCCATTGAGCGTGTTAAGCTTTTGATTCAAAACCAAGATGAGAT
GATCAAGAGTGGTAGGCTATCTGAACCCTACAAGGGCATTGGTGATTGTT
TTAAGCGTACAATGAAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAAT
ACTGCTAATGTTATCCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATT
CAAGGATTACTTCAAGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTT
ACTGGAAATGGTTTGCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCT
TCATCCCTTCTCTTTGTTTACTCTTTGGACTATGCTCGTACCCGTCTGGC
CAATGATGCCAAAGCTGCGAAGAAGGGAGGAGAGAGGCAATTCAATGGGC
TGGTTGATGTCTACAGAAAGACAATGAAATCTGATGGCATTGCTGGGCTT
TACCGTGGTTTCACATTTCATGTGTTGGAATCATTGTGTACCGTGGTCTT
TACTTTGGCATGTATGAATCTCTGAAGCCAGTGGTCTTGAC