FC875406 | Citrus Genome Database

Overview


Name	FC875406
Unique Name	FC875406
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	741

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10325	contig	Ccv1_Contig10325:231..972.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT1_HUMAN (ADP/ATP translocase 1 OS=Homo sapiens GN=SLC25A4 PE=1 SV=4)

HSP 1 Score: 170.629 bits (431), Expect = 3.392e-45
Identity = 96/177 (54.24%), Postives = 114/177 (64.41%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            F  DFL GGV+AAVSKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G ++ WRGN ANVIRYFPTQALNFAFKD +K+LF    DR   +W++FAGN             FVY LD+ARTRLA D    K   +R+F+GL D   K  KSDG+ GLY+GF   V
Sbjct:    8 FLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 3.392e-45
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGVYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT1_RABIT (ADP/ATP translocase 1 OS=Oryctolagus cuniculus GN=SLC25A4 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.275e-44
Identity = 94/177 (53.11%), Postives = 114/177 (64.41%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            F  DFL GGV+AAVSKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G ++ WRGN ANVIRYFPTQALNFAFKD +K++F    DR   +W++FAGN             FVY LD+ARTRLA D    K   +R+F+GL +   K  KSDG+ GLY+GF   V
Sbjct:    8 FLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFSGLGNCLTKIFKSDGLRGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 1.275e-44
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGVYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT1_BOVIN (ADP/ATP translocase 1 OS=Bos taurus GN=SLC25A4 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 2.165e-44
Identity = 93/177 (52.54%), Postives = 113/177 (63.84%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHV 674
            F  DFL GGV+AA+SKTA APIERVKLL+Q Q    K     + YKGI DC  R  K++G ++ WRGN ANVIRYFPTQALNFAFKD +K++F    DR   +W++FAGN             FVY LD+ARTRLA D    K   +R+F GL +   K  KSDG+ GLY+GF   V
Sbjct:    8 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 181

HSP 2 Score: 32.7278 bits (73), Expect = 2.165e-44
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F++S  GII+YR  YFG+Y++ K
Sbjct:  177 FNVSVQGIIIYRAAYFGVYDTAK 199

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT_CHLKE (ADP,ATP carrier protein OS=Chlorella kessleri PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.538e-42
Identity = 93/213 (43.66%), Postives = 118/213 (55.40%), Query Frame = 3

Query:   30 SNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDE--MIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            S+A +Q   +S      +M P T   I      +     F  D L GG + A+SKTA APIERVKLL+Q QD   MIKSG++   Y GI +CF R   ++G+ + WRGN ANV+RYFPTQA NFAFKD  K LF     +  +W++F  N              VY LD+ARTRLA D  + K    R+F GLVD   K +K  G   LY+GF
Sbjct:    3 SSALYQQAGLSGLLRASAMGPQTPF-IASPKETQADPMAFVKDLLAGGTAGAISKTAVAPIERVKLLLQTQDSNPMIKSGQVPR-YTGIVNCFVRVSSEQGVASFWRGNLANVVRYFPTQAFNFAFKDTIKGLFPKYSPKTDFWRFFVVNLASGGLAGAGSLLIVYPLDFARTRLAADVGSGK---SREFTGLVDCLSKVVKRGGPMALYQGF 210

HSP 2 Score: 35.8094 bits (81), Expect = 2.538e-42
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLKPVV 736
            F +S  GIIVYRG YFG+Y++ K V+
Sbjct:  210 FGVSVQGIIVYRGAYFGLYDTAKGVL 235

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT4_MACFA (ADP/ATP translocase 4 OS=Macaca fascicularis GN=SLC25A31 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.324e-42
Identity = 91/175 (52.00%), Postives = 108/175 (61.71%), Query Frame = 3

Query:  141 AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD-GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            + F  D L GGV+AAVSKTA APIERVKLL+Q Q    K       YKG+ DC  R  +++G  + WRGN ANVIRYFPTQALNFAFKD +K+LF    +++  +W+WF  N              VY LD+ARTRL  D    K   ERQF GL D   K  KSDGIAGLY+GF
Sbjct:   18 SSFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASS-KQISPEARYKGMVDCLVRIPREQGFFSFWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAGATSLCVVYPLDFARTRLGVD--IGKGPEERQFKGLGDCIMKIAKSDGIAGLYQGF 189

HSP 2 Score: 31.5722 bits (70), Expect = 7.324e-42
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GIIVYR  YFG Y+++K
Sbjct:  189 FGVSVQGIIVYRASYFGAYDTVK 211

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT4_HUMAN (ADP/ATP translocase 4 OS=Homo sapiens GN=SLC25A31 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.324e-42
Identity = 91/175 (52.00%), Postives = 108/175 (61.71%), Query Frame = 3

Query:  141 AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD-GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            + F  D L GGV+AAVSKTA APIERVKLL+Q Q    K       YKG+ DC  R  +++G  + WRGN ANVIRYFPTQALNFAFKD +K+LF    +++  +W+WF  N              VY LD+ARTRL  D    K   ERQF GL D   K  KSDGIAGLY+GF
Sbjct:   18 SSFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASS-KQISPEARYKGMVDCLVRIPREQGFFSFWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAGATSLCVVYPLDFARTRLGVD--IGKGPEERQFKGLGDCIMKIAKSDGIAGLYQGF 189

HSP 2 Score: 31.5722 bits (70), Expect = 7.324e-42
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GIIVYR  YFG Y+++K
Sbjct:  189 FGVSVQGIIVYRASYFGAYDTVK 211

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT4_BOVIN (ADP/ATP translocase 4 OS=Bos taurus GN=SLC25A31 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.541e-42
Identity = 93/182 (51.10%), Postives = 109/182 (59.89%), Query Frame = 3

Query:  129 EKGF---AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD-GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            EKG      F  D L GGV+AAVSKT  APIERVKLL+Q Q    K       YKGI DC  R  +++G ++ WRGN ANVIRYFPTQALNFAFKD +K+LF    +++  +W+WF  N              VY LD+ARTRL  D    K   ERQF GL D   K  KSDGI GLY+GF
Sbjct:   15 EKGLFDATSFGKDLLAGGVAAAVSKTTVAPIERVKLLLQVQASS-KQISPEAQYKGIVDCLVRIPREQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAGATSLCVVYPLDFARTRLGAD--IGKGPEERQFKGLGDCIMKIAKSDGIVGLYQGF 193

HSP 2 Score: 31.5722 bits (70), Expect = 9.541e-42
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GIIVYR  YFG Y+++K
Sbjct:  193 FGVSVQGIIVYRASYFGAYDTVK 215

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT2_ANOGA (ADP,ATP carrier protein 2 OS=Anopheles gambiae GN=AGAP002358 PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.113e-41
Identity = 91/174 (52.30%), Postives = 113/174 (64.94%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD-GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGE-RQFNGLVDVYRKTMKSDGIAGLYRGF 662
            F  DF  GG+SAA+SKTA APIERVKLL+Q Q  + K    ++ YKG+ DCF R  +++G  A WRGN ANVIRYFPTQALNFAFKD +K++F    D++  + ++F GN             FVY LD+ARTRLA D     KG E R+F GL D   K  K+DG+ GLYRGF
Sbjct:   10 FIKDFAAGGISAAISKTAVAPIERVKLLLQVQ-HISKQIAEADRYKGMVDCFVRIPREQGFSAFWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFTRYFIGNLASGGMAGATSLCFVYPLDFARTRLAAD---VGKGAEAREFKGLGDCISKIFKTDGLVGLYRGF 179

HSP 2 Score: 30.0314 bits (66), Expect = 2.113e-41
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GII+YR  YFG Y++ +
Sbjct:  179 FGVSVQGIIIYRAAYFGFYDTAR 201

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT4_MOUSE (ADP/ATP translocase 4 OS=Mus musculus GN=Slc25a31 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.346e-40
Identity = 88/173 (50.87%), Postives = 107/173 (61.85%), Query Frame = 3

Query:  147 FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD-GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            F+ D L GGV+AAVSKTA APIERVKLL+Q Q    K       YKG+ DC  R  +++G ++ WRGN ANVIRYFPTQALNFAFKD +K LF    +++  +W+WF  N              VY LD+ARTRL  D    K   +RQF GL D   K  KSDG+ GLY+GF
Sbjct:   21 FSKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASS-KQISPEARYKGMLDCLVRIPREQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKELFMSGVNKEKQFWRWFLANLASGGAAGATSLCVVYPLDFARTRLGVD--IGKGPEQRQFTGLGDCIMKIAKSDGLIGLYQGF 190

HSP 2 Score: 31.5722 bits (70), Expect = 1.346e-40
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F +S  GIIVYR  YFG Y+++K
Sbjct:  190 FGVSVQGIIVYRASYFGAYDTVK 212

[Close]

BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: ADT_DICDI (Mitochondrial substrate carrier family protein ancA OS=Dictyostelium discoideum GN=ancA PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.286e-40
Identity = 86/174 (49.43%), Postives = 105/174 (60.34%), Query Frame = 3

Query:  141 AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            + F  D L+GG +  VSKT  APIERVKLL+Q Q    +     + YKGI DCF R  K++G+++LWRGN ANVIRYFPTQALNFAFKD +K+ F     ++   K+F GN             FVY LD+ARTRLA D      G  RQF GL +      K DG+ GLYRGF
Sbjct:   10 SSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAA-DKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGT---GSARQFTGLGNCISSIYKRDGLIGLYRGF 179

HSP 2 Score: 29.261 bits (64), Expect = 2.286e-40
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 2

Query:  659 FHISCVGIIVYRGLYFGMYESLKPVVL 739
            F +S  GI VYR  +FG Y++ K ++L
Sbjct:  179 FGVSVGGIFVYRAAFFGGYDTAKGILL 205

The following BLAST results are available for this feature:

BLAST of FC875406 vs. ExPASy Swiss-Prot

BLAST of FC875406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
ADT1_HUMAN	3.392e-45	54.24	ADP/ATP translocase 1 OS=Homo sapiens GN=SLC25A4 P...	[more]
ADT1_RABIT	1.275e-44	53.11	ADP/ATP translocase 1 OS=Oryctolagus cuniculus GN=...	[more]
ADT1_BOVIN	2.165e-44	52.54	ADP/ATP translocase 1 OS=Bos taurus GN=SLC25A4 PE=...	[more]
ADT_CHLKE	2.538e-42	43.66	ADP,ATP carrier protein OS=Chlorella kessleri PE=3...	[more]
ADT4_MACFA	7.324e-42	52.00	ADP/ATP translocase 4 OS=Macaca fascicularis GN=SL...	[more]
ADT4_HUMAN	7.324e-42	52.00	ADP/ATP translocase 4 OS=Homo sapiens GN=SLC25A31 ...	[more]
ADT4_BOVIN	9.541e-42	51.10	ADP/ATP translocase 4 OS=Bos taurus GN=SLC25A31 PE...	[more]
ADT2_ANOGA	2.113e-41	52.30	ADP,ATP carrier protein 2 OS=Anopheles gambiae GN=...	[more]
ADT4_MOUSE	1.346e-40	50.87	ADP/ATP translocase 4 OS=Mus musculus GN=Slc25a31 ...	[more]
ADT_DICDI	2.286e-40	49.43	Mitochondrial substrate carrier family protein anc...	[more]

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Properties


Property Name	Value
Genbank description	C31403E12EF CTVClemen1 Citrus clementina cDNA clone C31403E12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875406 ID=FC875406; Name=FC875406; organism=Citrus clementina; type=EST; length=741bp
ACCAAAGACGTGGTGCTTATGGGAACTACTCCAATGCTGCATTCCAATAC
CCCATAGTCAGTGCAGCTACTACCGATCTATCTATGGTGCCGTCAACTGC
ATCTGCTATTTGCGTCCAAGCCCCAGCTGAGAAAGGCTTTGCAGGCTTTG
CTATCGATTTCCTTATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCT
GCTGCTCCCATTGAGCGTGTTAAGCTTTTGATTCAAAACCAAGATGAGAT
GATCAAGAGTGGTAGGCTATCTGAACCCTACAAGGGCATTGGTGATTGTT
TTAAGCGTACAATGAAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAAT
ACTGCTAATGTTATCCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATT
CAAGGATTACTTCAAGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTT
ACTGGAAATGGTTTGCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCT
TCATCCCTTCTCTTTGTTTACTCTTTGGACTATGCTCGTACCCGTCTGGC
CAATGATGCCAAAGCTGCGAAGAAGGGAGGAGAGAGGCAATTCAATGGGC
TGGTTGATGTCTACAGAAAGACAATGAAATCTGATGGCATTGCTGGGCTT
TACCGTGGTTTCACATTTCATGTGTTGGAATCATTGTGTACCGTGGTCTT
TACTTTGGCATGTATGAATCTCTGAAGCCAGTGGTCTTGAC