FC875406

Overview
NameFC875406
Unique NameFC875406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10325 contig Ccv1_Contig10325:231..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.682e-15
Identity = 50/172 (29.07%), Postives = 92/172 (53.49%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F++ +K+ GI +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  +K +K +G+   Y+G+  ++L
Sbjct:  199 LAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLL 352

HSP 2 Score: 21.557 bits (44), Expect = 2.682e-15
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE LK
Sbjct:  352 LGIIPYAGIDLAVYELLK 369
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.486e-15
Identity = 52/172 (30.23%), Postives = 93/172 (54.07%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L GGV+ AVS+T+ AP++R+K+++Q      KS +++  Y G    F++ +K+ GI +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  +K +K +G+   Y+G+  ++L
Sbjct:  199 LAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMNI-YGG----FQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLL 352

HSP 2 Score: 21.557 bits (44), Expect = 3.486e-15
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE LK
Sbjct:  352 LGIIPYAGIDLAVYELLK 369
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.678e-14
Identity = 47/172 (27.33%), Postives = 89/172 (51.74%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L GG++ AVS+T+ AP++R+K+++Q     +   +    + G    F++ +K+ G+ +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  +K +K +G    Y+G+  ++L
Sbjct:  199 LAGGIAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLL 350

HSP 2 Score: 21.557 bits (44), Expect = 1.678e-14
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE LK
Sbjct:  350 LGIIPYAGIDLAVYELLK 367
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.832e-14
Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            + GG++ AVS+T  AP++R+K+++Q       S  ++          K+ +K+ GI +LWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  +K M+ +GI   Y+G+  ++L
Sbjct:  199 MAGGMAGAVSRTGTAPLDRLKVMMQVHGSKGNSNIITG--------LKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNIL 351

HSP 2 Score: 22.7126 bits (47), Expect = 2.832e-14
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  351 LGIIPYAGIDLAIYETLK 368
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.679e-14
Identity = 49/171 (28.65%), Postives = 91/171 (53.22%), Query Frame = 3 
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            GGV+ AVS+T  AP++R+K+ +Q      K+ ++S     + + FK+ +K+ G+ +LWRGN  NVI+  P  A+ F A++ Y K L         + ++ AG+              +Y ++  +TRL       +K G  Q++G+ D  +K ++ +G+   Y+G+  ++L
Sbjct:  202 GGVAGAVSRTGTAPLDRMKVFMQVHSS--KTNKIS-----LVNGFKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLSKDGGKVQSHERFMAGSLAGATAQTA-----IYPMEVMKTRL-----TLRKTG--QYSGMFDCAKKILRKEGVKAFYKGYVPNIL 353

HSP 2 Score: 22.7126 bits (47), Expect = 3.679e-14
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  353 LGIIPYAGIDLAVYETLK 370
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.679e-14
Identity = 50/172 (29.07%), Postives = 90/172 (52.33%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L GGV+ AVS+T+ AP++R+K+++Q     +   +    + G    F++ +K+ GI +LWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA     AK G   Q++G+    +K +K +G    Y+G+  ++L
Sbjct:  199 LAGGVAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISG----SMAGATAQTFIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGYIPNLL 350

HSP 2 Score: 21.557 bits (44), Expect = 3.679e-14
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE LK
Sbjct:  350 LGIIPYAGIDLAVYELLK 367
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.680e-14
Identity = 50/173 (28.90%), Postives = 89/173 (51.45%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L GG++ AVS+T  AP++R+K+++Q       S  ++          K+ +K+ G+ +LWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  +K M+ +GI   Y+G+  ++L
Sbjct:  199 LAGGMAGAVSRTGTAPLDRLKVMMQVHGTKGNSNIITG--------LKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPNIL 351

HSP 2 Score: 22.7126 bits (47), Expect = 3.680e-14
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  351 LGIIPYAGIDLAIYETLK 368
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.717e-14
Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 3 
Query:  114 VQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLS--EPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            V +   K         + G ++ AV+KTA AP++R K++ Q     + S R S  E Y+ I     RT  +EG ++LWRGN+A ++R  P  A+ F   + +K+L        G                       Y LD  R R+A   K         ++ ++ V+ +  + +G+  LYRGFT  VL
Sbjct:   25 VVSEGHKNHKSILNSLMSGALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSAKEAYRLI----YRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATIITYPLDLVRARMAVTPK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVL 198

HSP 2 Score: 23.483 bits (49), Expect = 3.717e-14
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2 
Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F  + +G+I Y G+ F  YE+LK
Sbjct:  193 FTPTVLGVIPYAGISFFTYETLK 215
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.780e-14
Identity = 51/173 (29.48%), Postives = 89/173 (51.45%), Query Frame = 3 
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L GG++ AVS+T  AP++R+K+++Q           S+    I    K+ +K+ GI +LWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  +K M+ +G+   Y+G+  ++L
Sbjct:  199 LAGGMAGAVSRTGTAPLDRLKVMMQVHG--------SKGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNIL 351

HSP 2 Score: 22.7126 bits (47), Expect = 4.780e-14
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  351 LGIIPYAGIDLAIYETLK 368
[Close]
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-13
Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 3 
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLS--EPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            G ++ AV+KTA AP++R K++ Q     + S R S  E Y+ I     RT  ++G ++LWRGN+A ++R  P  A+ F   + +K+L        G                       Y LD  R R+A   K         ++ ++ V+ +  + +G+  LYRGFT  VL
Sbjct:   43 GALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSAKEAYRLI----YRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATLLTYPLDLVRARMAVTQK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVL 198

HSP 2 Score: 23.483 bits (49), Expect = 1.059e-13
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2 
Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F  + +G+I Y G+ F  YE+LK
Sbjct:  193 FTPTVLGVIPYAGISFFTYETLK 215
The following BLAST results are available for this feature:
BLAST of FC875406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
SCMC1_HUMAN2.682e-1529.07Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN3.486e-1530.23Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT1.678e-1427.33Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA2.832e-1427.91Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE3.679e-1428.65Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE3.679e-1429.07Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA3.680e-1428.90Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENTR3.717e-1427.89Solute carrier family 25 member 42 OS=Xenopus trop... [more]
SCMC1_XENTR4.780e-1429.48Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENLA1.059e-1329.07Solute carrier family 25 member 42 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC31403E12EF CTVClemen1 Citrus clementina cDNA clone C31403E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875406 ID=FC875406; Name=FC875406; organism=Citrus clementina; type=EST; length=741bp
ACCAAAGACGTGGTGCTTATGGGAACTACTCCAATGCTGCATTCCAATAC
CCCATAGTCAGTGCAGCTACTACCGATCTATCTATGGTGCCGTCAACTGC
ATCTGCTATTTGCGTCCAAGCCCCAGCTGAGAAAGGCTTTGCAGGCTTTG
CTATCGATTTCCTTATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCT
GCTGCTCCCATTGAGCGTGTTAAGCTTTTGATTCAAAACCAAGATGAGAT
GATCAAGAGTGGTAGGCTATCTGAACCCTACAAGGGCATTGGTGATTGTT
TTAAGCGTACAATGAAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAAT
ACTGCTAATGTTATCCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATT
CAAGGATTACTTCAAGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTT
ACTGGAAATGGTTTGCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCT
TCATCCCTTCTCTTTGTTTACTCTTTGGACTATGCTCGTACCCGTCTGGC
CAATGATGCCAAAGCTGCGAAGAAGGGAGGAGAGAGGCAATTCAATGGGC
TGGTTGATGTCTACAGAAAGACAATGAAATCTGATGGCATTGCTGGGCTT
TACCGTGGTTTCACATTTCATGTGTTGGAATCATTGTGTACCGTGGTCTT
TACTTTGGCATGTATGAATCTCTGAAGCCAGTGGTCTTGAC
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