FC875406

Overview
NameFC875406
Unique NameFC875406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10325 contig Ccv1_Contig10325:231..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 58/201 (28.86%), Postives = 89/201 (44.28%), Query Frame = 3
Query:   63 AATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKT-MKSDGIAGLYRG 659
            AAT     +P  A A     PA +    +   FL GG++   +KT  AP++RVK+L+Q  +   +       + G+    +   K EG + L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G++  ++    K  G  G YRG
Sbjct:    9 AATEPPPAMPQAAGA---GGPAARRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNHHYR-------HLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHTYTGIIHAFKTIYAKEGGFLGFYRG 189          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = 3
Query:  159 FLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKT-MKSDGIAGLYRG 659
            FL GG++   +KT  AP++RVK+L+Q  +   K       + G+    +   + EG + L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G++  ++    K  G  G YRG
Sbjct:   40 FLAGGIAGCCAKTTVAPLDRVKVLLQAHNHHYK-------HLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHSYTGIIHAFKTIYAKEGGFFGFYRG 191          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: GDC_MOUSE (Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 54/204 (26.47%), Postives = 88/204 (43.14%), Query Frame = 3
Query:   54 IVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKT-MKSDGIAGLYRG 659
            + +AA       P+   A     P  +    +   FL GG++   +KT  AP++RVK+L+Q  +   K       + G+    +   + EG + L++GN A +IR FP  A+ F   +++K     K    G+  +  AG+               Y LD  R RLA   K     GE  ++G++  ++    K  G  G YRG
Sbjct:    5 VAAAALAAAEPAPAVPQAAGSGGPTSRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNRHYK-------HLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGMTAVIC-----TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEGGFLGFYRG 191          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.118e-12
Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLS--EPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            G  + AV+KTA AP++R K++ Q     + S R S  E Y+ I     RT   +G  +LWRGN+A ++R  P  A+ F   + +K +        G                       Y LD  R R+A   K         ++ ++DV+ +  + +G+  LYRGFT  +L
Sbjct:   42 GAFAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSAKEAYRLI----YRTYLKDGFFSLWRGNSATMVRVIPYAAIQFCAHEQYKGILGKYYGFQGKALPPVPRLLAGSLAGTTAAIITYPLDMVRARMAVTPK-------EMYSNIMDVFVRISREEGLKTLYRGFTPTIL 197          

HSP 2 Score: 23.8682 bits (50), Expect = 4.118e-12
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F  + +G++ Y GL F  YE+LK
Sbjct:  192 FTPTILGVVPYAGLSFFTYETLK 214          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 43/133 (32.33%), Postives = 63/133 (47.37%), Query Frame = 3
Query:  153 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 551
            +  L GGVS  ++K+  AP+ERVK+L Q + +M         +  +    K  +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+    + F                  Y LD  R RLA
Sbjct:   13 VTLLAGGVSGVIAKSTIAPLERVKILYQVKSKMYS-------FNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDKKSSVQIFIAG----SLGFSCAILLTYPLDVIRARLA 132          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.251e-12
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD---GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGF 662
            GG + AVS+T  AP +R+K+ +Q      K+ RL     G+  C K    + GI + WRGN  NVI+  P  A+ F   D  KRL   KK  +    + +  AG+              +Y ++  +TRL     A +K G+    G++    K    +GI   Y+G+
Sbjct:  255 GGAAGAVSRTCTAPFDRIKVYLQVNSS--KTNRL-----GVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEISTFERLCAGSAAGAISQST-----IYPMEVMKTRL-----ALRKTGQLD-RGIIHFAHKMYTKEGIRCFYKGY 404          

HSP 2 Score: 23.483 bits (49), Expect = 5.251e-12
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  409 IGIIPYAGIDLAIYETLK 426          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.285e-12
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            GG + AVS+T  AP++R+K+L+Q       S        GI   F + +++ G+ +LWRGN  NV++  P  A+ F   +  KRL    ++  G  +                   +Y ++  +TRLA        G   Q++G+ D  +   K +G+   Y+G+  ++L
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVHATRSNS-------MGIAGGFTQMIREGGLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSNQETLGILERLVSGSLAGAIAQSS----IYPMEVLKTRLA-------LGRTGQYSGIADCAKHIFKKEGMTAFYKGYIPNML 344          

HSP 2 Score: 22.7126 bits (47), Expect = 5.285e-12
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  344 LGIIPYAGIDLAVYETLK 361          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 49/169 (28.99%), Postives = 74/169 (43.79%), Query Frame = 3
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR---DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRG 659
            L GGV+ AVS+T  +P+ER+K+L Q     ++        +GI    K     EG +  ++GN  NVIR  P  A+ F   + +K       D+     Y   F G                Y LD  R+RL       K      +NG+ D  +  ++ +G+AGLY+G
Sbjct:  143 LSGGVAGAVSRTCTSPLERLKILNQVGHMNLEQNAPKYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTYENLFVGGAAGVTSLLC-----TYPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKG 300          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.156e-11
Identity = 48/170 (28.24%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            GG + AVS+T  AP++R+K+L+Q      KS  L            + +K+ G+ +LWRGN  NVI+  P  AL F   +  KR+    ++  G  + F                 +Y ++  +TRL     A +K G  Q+ G+ D  +  +K++G++  Y+G+  ++L
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQVHGCQGKSMCLMSG-------LTQMIKEGGVRSLWRGNGINVIKIAPETALKFMAYEQIKRVMGSSQETLGISERFVAGSLAGVIAQST----IYPMEVLKTRL-----ALRKTG--QYKGISDCAKHILKTEGMSAFYKGYVPNML 344          

HSP 2 Score: 22.7126 bits (47), Expect = 1.156e-11
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  344 LGIIPYAGIDLAVYETLK 361          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_HUMAN (Solute carrier family 25 member 42 OS=Homo sapiens GN=SLC25A42 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.171e-11
Identity = 50/177 (28.25%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRL----FNFKKDRDGYW-KWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L G ++ A++KTA AP++R K++ Q     + S R S   K        T  +EG ++LWRGN+A ++R  P  A+ F+  + +KR+    + F+ +    W + FAG                Y LD  R R+A   K         ++ +  V+ +  + +G+  LY GF   VL
Sbjct:   38 LSGALAGALAKTAVAPLDRTKIIFQ-----VSSKRFSA--KEAFRVLYYTYLNEGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPWPRLFAG-----ALAGTTAASLTYPLDLVRARMAVTPK-------EMYSNIFHVFIRISREEGLKTLYHGFMPTVL 195          

HSP 2 Score: 24.2534 bits (51), Expect = 1.171e-11
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F  + +G+I Y GL F  YE+LK
Sbjct:  190 FMPTVLGVIPYAGLSFFTYETLK 212          
The following BLAST results are available for this feature:
BLAST of FC875406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
GDC_BOVIN7.569e-1328.86Graves disease carrier protein OS=Bos taurus GN=SL... [more]
GDC_HUMAN2.202e-1229.59Graves disease carrier protein OS=Homo sapiens GN=... [more]
GDC_MOUSE2.876e-1226.47Graves disease carrier protein homolog OS=Mus musc... [more]
S2542_DANRE4.118e-1228.49Solute carrier family 25 member 42 OS=Danio rerio ... [more]
MCFR_DICDI4.906e-1232.33Mitochondrial substrate carrier family protein R O... [more]
CMC2_CAEEL5.251e-1229.76Putative calcium-binding mitochondrial carrier F55... [more]
SCM2B_DANRE5.285e-1226.47Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFB_DICDI8.368e-1228.99Mitochondrial substrate carrier family protein B O... [more]
SCM2A_DANRE1.156e-1128.24Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_HUMAN1.171e-1128.25Solute carrier family 25 member 42 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC31403E12EF CTVClemen1 Citrus clementina cDNA clone C31403E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875406 ID=FC875406; Name=FC875406; organism=Citrus clementina; type=EST; length=741bp
ACCAAAGACGTGGTGCTTATGGGAACTACTCCAATGCTGCATTCCAATAC
CCCATAGTCAGTGCAGCTACTACCGATCTATCTATGGTGCCGTCAACTGC
ATCTGCTATTTGCGTCCAAGCCCCAGCTGAGAAAGGCTTTGCAGGCTTTG
CTATCGATTTCCTTATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCT
GCTGCTCCCATTGAGCGTGTTAAGCTTTTGATTCAAAACCAAGATGAGAT
GATCAAGAGTGGTAGGCTATCTGAACCCTACAAGGGCATTGGTGATTGTT
TTAAGCGTACAATGAAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAAT
ACTGCTAATGTTATCCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATT
CAAGGATTACTTCAAGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTT
ACTGGAAATGGTTTGCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCT
TCATCCCTTCTCTTTGTTTACTCTTTGGACTATGCTCGTACCCGTCTGGC
CAATGATGCCAAAGCTGCGAAGAAGGGAGGAGAGAGGCAATTCAATGGGC
TGGTTGATGTCTACAGAAAGACAATGAAATCTGATGGCATTGCTGGGCTT
TACCGTGGTTTCACATTTCATGTGTTGGAATCATTGTGTACCGTGGTCTT
TACTTTGGCATGTATGAATCTCTGAAGCCAGTGGTCTTGAC
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