FC875406

Overview
NameFC875406
Unique NameFC875406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10325 contig Ccv1_Contig10325:231..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.171e-11
Identity = 50/177 (28.25%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRL----FNFKKDRDGYW-KWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L G ++ A++KTA AP++R K++ Q     + S R S   K        T  +EG ++LWRGN+A ++R  P  A+ F+  + +KR+    + F+ +    W +  AG                Y LD  R R+A   K         ++ +  V+ +  + +G+  LY GFT  VL
Sbjct:   38 LSGALAGALAKTAVAPLDRTKIIFQ-----VSSKRFSA--KEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAG-----ALAGTTAASLTYPLDLVRARMAVTPK-------EMYSNIFHVFIRISREEGLKTLYFGFTPTVL 195          

HSP 2 Score: 25.409 bits (54), Expect = 1.171e-11
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F  + +G+I Y GL F  YESLK
Sbjct:  190 FTPTVLGVIPYAGLSFFTYESLK 212          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.171e-11
Identity = 50/177 (28.25%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRL----FNFKKDRDGYW-KWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            L G ++ A++KTA AP++R K++ Q     + S R S   K        T  +EG ++LWRGN+A ++R  P  A+ F+  + +KR+    + F+ +    W +  AG                Y LD  R R+A   K         ++ +  V+ +  + +G+  LY GFT  VL
Sbjct:   38 LSGALAGALAKTAVAPLDRTKIIFQ-----VSSKRFSA--KEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAG-----ALAGTTAASLTYPLDLVRARMAVTPK-------EMYSNIFHVFIRISREEGLKTLYFGFTPTVL 195          

HSP 2 Score: 25.409 bits (54), Expect = 1.171e-11
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  659 FHISCVGIIVYRGLYFGMYESLK 727
            F  + +G+I Y GL F  YESLK
Sbjct:  190 FTPTVLGVIPYAGLSFFTYESLK 212          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.497e-11
Identity = 48/171 (28.07%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            GG + AVS+T  AP++R+K+L+Q     + + R S     +G  F + +++ GI +LWRGN  NVI+  P  A+ F   +  KR+    ++  G + +  AG+              +Y ++  +TR+     A +K G  Q+ G++D  +K +  +G++  Y+G+  ++L
Sbjct:  237 GGGAGAVSRTCTAPLDRLKVLMQ-----VHASR-SNNMSMLGG-FTQMIREGGIRSLWRGNGINVIKIAPESAIKFMAYEQMKRIIGSDQETLGIHERLVAGSLAGVIAQSS-----IYPMEVLKTRM-----ALRKTG--QYQGMLDCGKKILLKEGVSAFYKGYVPNML 388          

HSP 2 Score: 22.7126 bits (47), Expect = 1.497e-11
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  388 LGIIPYAGIDLAVYETLK 405          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.944e-11
Identity = 46/170 (27.06%), Postives = 84/170 (49.41%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            GG + AVS+T  AP++R+K+L+Q      +S  +S     I   F   +++ G  +LWRGN  NVI+  P  A+ F   +  KR+    ++  G  + F                 +Y ++  +TR+     A +K G  Q+ G++D  +K +  +G++  Y+G+  ++L
Sbjct:  238 GGGAGAVSRTCTAPLDRLKVLMQVHAS--RSNNMS-----ILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHERFVAGSLAGVIAQSS----IYPMEVLKTRM-----ALRKTG--QYQGVLDCGKKILLQEGLSAFYKGYVPNML 389          

HSP 2 Score: 22.7126 bits (47), Expect = 1.944e-11
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  389 LGIIPYAGIDLAVYETLK 406          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.530e-11
Identity = 47/171 (27.49%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677
            GG + AVS+T  AP++R+K+L+Q     + + R +    GI   F + +++ G  +LWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+     A +K G  Q++G++D  R+ +  +G+A  Y+G+  ++L
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQ-----VHASRSNN--MGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRM-----ALRKTG--QYSGMLDCARRILAREGVAAFYKGYVPNML 344          

HSP 2 Score: 22.7126 bits (47), Expect = 2.530e-11
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  674 VGIIVYRGLYFGMYESLK 727
            +GII Y G+   +YE+LK
Sbjct:  344 LGIIPYAGIDLAVYETLK 361          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 53/204 (25.98%), Postives = 88/204 (43.14%), Query Frame = 3
Query:   54 IVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKT-MKSDGIAGLYRG 659
            + +AA       P+  +A     P  +    +   FL G ++   +KT  AP++RVK+L+Q  +   K       + G+    +   + EG + L++GN A +IR FP  A+ F   +++K     K    G+  +  AG+               Y LD  R RLA   K     GE  ++G++  ++    K  G  G YRG
Sbjct:    5 VAAAALAAAEPPPAVPAAAGSGGPTSRRDFYWLRSFLAGSIAGCCAKTTVAPLDRVKVLLQAHNHHYK-------HLGVLSPLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGKMSMTAVIC--TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEGGFLGFYRG 194          
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: MCFP_DICDI (Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  153 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRG 659
            + FL GG++   +K+A AP+ERVK+L Q + E+     L+  Y  +     + +++EGI  LWRGN+A ++R FP  A+ F   +  K   +   D+   ++ F AG+               Y LD  R RLA   +  KK  +        + + T   DG+ G+YRG
Sbjct:   16 VSFLSGGLAGVTAKSAVAPLERVKILYQIKSELYS---LNSVYGSM----LKIVENEGIKGLWRGNSATILRVFPYAAVQFLSYETIKN--HLVADKSSSFQIFLAGSAAGGIAVCA-----TYPLDLLRARLA--IEIHKKPTKPH-----HLLKSTFTKDGVKGIYRG 164          
The following BLAST results are available for this feature:
BLAST of FC875406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
S2542_RAT1.171e-1128.25Solute carrier family 25 member 42 OS=Rattus norve... [more]
S2542_MOUSE1.171e-1128.25Solute carrier family 25 member 42 OS=Mus musculus... [more]
SCMC2_XENTR1.497e-1128.07Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENLA1.944e-1127.06Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN2.530e-1127.49Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_RAT3.180e-1125.98Graves disease carrier protein (Fragment) OS=Rattu... [more]
MCFP_DICDI5.424e-1130.59Mitochondrial substrate carrier family protein P O... [more]

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Properties
Property NameValue
Genbank descriptionC31403E12EF CTVClemen1 Citrus clementina cDNA clone C31403E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875406 ID=FC875406; Name=FC875406; organism=Citrus clementina; type=EST; length=741bp
ACCAAAGACGTGGTGCTTATGGGAACTACTCCAATGCTGCATTCCAATAC
CCCATAGTCAGTGCAGCTACTACCGATCTATCTATGGTGCCGTCAACTGC
ATCTGCTATTTGCGTCCAAGCCCCAGCTGAGAAAGGCTTTGCAGGCTTTG
CTATCGATTTCCTTATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCT
GCTGCTCCCATTGAGCGTGTTAAGCTTTTGATTCAAAACCAAGATGAGAT
GATCAAGAGTGGTAGGCTATCTGAACCCTACAAGGGCATTGGTGATTGTT
TTAAGCGTACAATGAAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAAT
ACTGCTAATGTTATCCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATT
CAAGGATTACTTCAAGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTT
ACTGGAAATGGTTTGCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCT
TCATCCCTTCTCTTTGTTTACTCTTTGGACTATGCTCGTACCCGTCTGGC
CAATGATGCCAAAGCTGCGAAGAAGGGAGGAGAGAGGCAATTCAATGGGC
TGGTTGATGTCTACAGAAAGACAATGAAATCTGATGGCATTGCTGGGCTT
TACCGTGGTTTCACATTTCATGTGTTGGAATCATTGTGTACCGTGGTCTT
TACTTTGGCATGTATGAATCTCTGAAGCCAGTGGTCTTGAC
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