FC875406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.171e-11 Identity = 50/177 (28.25%), Postives = 83/177 (46.89%), Query Frame = 3 Query: 162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRL----FNFKKDRDGYW-KWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677 L G ++ A++KTA AP++R K++ Q + S R S K T +EG ++LWRGN+A ++R P A+ F+ + +KR+ + F+ + W + AG Y LD R R+A K ++ + V+ + + +G+ LY GFT VL Sbjct: 38 LSGALAGALAKTAVAPLDRTKIIFQ-----VSSKRFSA--KEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAG-----ALAGTTAASLTYPLDLVRARMAVTPK-------EMYSNIFHVFIRISREEGLKTLYFGFTPTVL 195 HSP 2 Score: 25.409 bits (54), Expect = 1.171e-11 Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2 Query: 659 FHISCVGIIVYRGLYFGMYESLK 727 F + +G+I Y GL F YESLK Sbjct: 190 FTPTVLGVIPYAGLSFFTYESLK 212
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.171e-11 Identity = 50/177 (28.25%), Postives = 83/177 (46.89%), Query Frame = 3 Query: 162 LMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRL----FNFKKDRDGYW-KWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677 L G ++ A++KTA AP++R K++ Q + S R S K T +EG ++LWRGN+A ++R P A+ F+ + +KR+ + F+ + W + AG Y LD R R+A K ++ + V+ + + +G+ LY GFT VL Sbjct: 38 LSGALAGALAKTAVAPLDRTKIIFQ-----VSSKRFSA--KEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAG-----ALAGTTAASLTYPLDLVRARMAVTPK-------EMYSNIFHVFIRISREEGLKTLYFGFTPTVL 195 HSP 2 Score: 25.409 bits (54), Expect = 1.171e-11 Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2 Query: 659 FHISCVGIIVYRGLYFGMYESLK 727 F + +G+I Y GL F YESLK Sbjct: 190 FTPTVLGVIPYAGLSFFTYESLK 212
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.497e-11 Identity = 48/171 (28.07%), Postives = 90/171 (52.63%), Query Frame = 3 Query: 168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677 GG + AVS+T AP++R+K+L+Q + + R S +G F + +++ GI +LWRGN NVI+ P A+ F + KR+ ++ G + + AG+ +Y ++ +TR+ A +K G Q+ G++D +K + +G++ Y+G+ ++L Sbjct: 237 GGGAGAVSRTCTAPLDRLKVLMQ-----VHASR-SNNMSMLGG-FTQMIREGGIRSLWRGNGINVIKIAPESAIKFMAYEQMKRIIGSDQETLGIHERLVAGSLAGVIAQSS-----IYPMEVLKTRM-----ALRKTG--QYQGMLDCGKKILLKEGVSAFYKGYVPNML 388 HSP 2 Score: 22.7126 bits (47), Expect = 1.497e-11 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 674 VGIIVYRGLYFGMYESLK 727 +GII Y G+ +YE+LK Sbjct: 388 LGIIPYAGIDLAVYETLK 405
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.944e-11 Identity = 46/170 (27.06%), Postives = 84/170 (49.41%), Query Frame = 3 Query: 168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677 GG + AVS+T AP++R+K+L+Q +S +S I F +++ G +LWRGN NVI+ P A+ F + KR+ ++ G + F +Y ++ +TR+ A +K G Q+ G++D +K + +G++ Y+G+ ++L Sbjct: 238 GGGAGAVSRTCTAPLDRLKVLMQVHAS--RSNNMS-----ILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHERFVAGSLAGVIAQSS----IYPMEVLKTRM-----ALRKTG--QYQGVLDCGKKILLQEGLSAFYKGYVPNML 389 HSP 2 Score: 22.7126 bits (47), Expect = 1.944e-11 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 674 VGIIVYRGLYFGMYESLK 727 +GII Y G+ +YE+LK Sbjct: 389 LGIIPYAGIDLAVYETLK 406
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.530e-11 Identity = 47/171 (27.49%), Postives = 89/171 (52.05%), Query Frame = 3 Query: 168 GGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFTFHVL 677 GG + AVS+T AP++R+K+L+Q + + R + GI F + +++ G +LWRGN NV++ P A+ F + KRL ++ + + AG+ +Y ++ +TR+ A +K G Q++G++D R+ + +G+A Y+G+ ++L Sbjct: 193 GGGAGAVSRTCTAPLDRLKVLMQ-----VHASRSNN--MGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRM-----ALRKTG--QYSGMLDCARRILAREGVAAFYKGYVPNML 344 HSP 2 Score: 22.7126 bits (47), Expect = 2.530e-11 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 674 VGIIVYRGLYFGMYESLK 727 +GII Y G+ +YE+LK Sbjct: 344 LGIIPYAGIDLAVYETLK 361
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11 Identity = 53/204 (25.98%), Postives = 88/204 (43.14%), Query Frame = 3 Query: 54 IVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKT-MKSDGIAGLYRG 659 + +AA P+ +A P + + FL G ++ +KT AP++RVK+L+Q + K + G+ + + EG + L++GN A +IR FP A+ F +++K K G+ + AG+ Y LD R RLA K GE ++G++ ++ K G G YRG Sbjct: 5 VAAAALAAAEPPPAVPAAAGSGGPTSRRDFYWLRSFLAGSIAGCCAKTTVAPLDRVKVLLQAHNHHYK-------HLGVLSPLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGKMSMTAVIC--TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEGGFLGFYRG 194
BLAST of FC875406 vs. ExPASy Swiss-Prot
Match: MCFP_DICDI (Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11 Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 3 Query: 153 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRG 659 + FL GG++ +K+A AP+ERVK+L Q + E+ L+ Y + + +++EGI LWRGN+A ++R FP A+ F + K + D+ ++ F AG+ Y LD R RLA + KK + + + T DG+ G+YRG Sbjct: 16 VSFLSGGLAGVTAKSAVAPLERVKILYQIKSELYS---LNSVYGSM----LKIVENEGIKGLWRGNSATILRVFPYAAVQFLSYETIKN--HLVADKSSSFQIFLAGSAAGGIAVCA-----TYPLDLLRARLA--IEIHKKPTKPH-----HLLKSTFTKDGVKGIYRG 164 The following BLAST results are available for this feature:
BLAST of FC875406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875406 ID=FC875406; Name=FC875406; organism=Citrus clementina; type=EST; length=741bpback to top |