FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.111e-71
Identity = 141/198 (71.21%), Postives = 156/198 (78.79%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +AFG   DSFS  S KAY+AEFI+TLLFVFAGVGSAIA+ ++T   ALDP+GLVAIAI H  ALFV V++ ANISGGH+NPAVTFGLA+GG ITILTG+FYW+AQLLG+ VA  LL  VT G A+PTH                  TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS
Sbjct:    4 LAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTH-AVAGISELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 200          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.713e-65
Identity = 129/196 (65.82%), Postives = 143/196 (72.96%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPA 691
            IA GR D++    + KA LAEFISTL+FV AG GS +AFNK+T + A  PSGLVA A+ H F LFVAV++GANISGGHVNPAVTFG  +GG IT+L GI YWIAQLLGS+VA  +LK  TGGLAVP                    TFGLVYTVYATA DPK GSLGTIAPIAIGFIVGANILA G FSG SMNPA
Sbjct:    6 IAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPA 201          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.231e-62
Identity = 127/200 (63.50%), Postives = 141/200 (70.50%), Query Frame = 2
Query:   95 TMAIAFGRFDDS-FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPA 691
            T  IA G   +  +   + +A LAEFISTL+FVFAG GS IAFNK+T + A  PSGLVA A+ H F LFVAV++GANISGGHVNPAVTFG+ LGG IT+L GI YWIAQLLGS+ A FLL   TGG  +P                    TFGLVYTVYATA DPK GSLGTIAPIAIGFIVGANILA G FSG SMNPA
Sbjct:    3 TRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPA 202          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.362e-61
Identity = 125/198 (63.13%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            IA G   + +  G+ KA LAEFISTL+FVFAG GS +AF+K+T   A  P+GL+A A+ H FALFVAV++GANISGGHVNPAVTFG  +GG IT+  G+ YWIAQLLGS VA FLL+  TGGLA  T                   TFGLVYTVYATA DPKKGSLGTIAPIAIGFIVGANIL  G F G SMNPA S
Sbjct:    6 IAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG-LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVS 202          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.471e-60
Identity = 121/198 (61.11%), Postives = 138/198 (69.70%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            IA G   + +  G+ KA  AEFISTL+FVFAG GS +AF+K+T      P+GL+A A+ H FALFVAV++GANISGGHVNPAVTFG  +GG IT+  G+ YW+AQLLGS VA FLL+  TGG A  T                   TFGLVYTVYATA DPKKGSLGTIAPIAIGFIVGANIL  G F G SMNPA S
Sbjct:    6 IALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG-LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVS 202          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.558e-57
Identity = 113/183 (61.75%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            KA +AEFISTL+FVFAG GS +AF+K+T   A  P+GL+A ++ H  ALFVAV++GANISGGHVNPAVTFG  +GG I++L  + YW+AQLLGS+VA  LLK+ TGG A+   +                 TFGLVYTVYATA DPKKG LG IAPIAIGFIVGANILA G F G SMNPA S
Sbjct:   21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVS 203          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.470e-57
Identity = 113/183 (61.75%), Postives = 131/183 (71.58%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            KA +AEFIS L+FVFAG GS +AF+K+T      PSGL+A ++ H  ALFVAVA+GANISGGHVNPAVTFG  +GG I+++  + YW+AQLLGS+VA  LLK+ TGG AV   +                 TFGLVYTVYATA DPKKG LG IAPIAIGFIVGANILA G F G SMNPA S
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVS 203          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.533e-57
Identity = 121/198 (61.11%), Postives = 139/198 (70.20%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            IA G   ++    + KA LAEFIST +FVFAG GS IA+NK+T D A  P+GL++ +I H FALFVAV++GANISGGHVNPAVTFG  +GG IT+L GI Y IAQLLGSIVAS LL  VT   +VP                    TFGLVYTVYATA DPKKG++G IAPIAIGFIVGANIL  G F+G SMNPA S
Sbjct:    6 IAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVS 202          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 110/198 (55.56%), Postives = 133/198 (67.17%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            IA G   ++    + +A  AEF S ++FVFAG GS +A+ K+T D    P+GLVA ++ H FALFVAV++GAN+SGGHVNPAVTFG  +GG IT+L  I YWIAQLLG++VA  LLKV TGG+     +                 TFGLVYTVYATA DPKKG +G IAP+AIG IVGANIL  G F G SMNPA S
Sbjct:    6 IAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVS 203          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.234e-54
Identity = 119/198 (60.10%), Postives = 137/198 (69.19%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            IA G   ++    + KA LAEFIST +FVFAG GS IA+NK+T D A  P+GL++ +I H FALFVAV++GANISGGHVNPAV FG  +GG IT+L GI Y IAQLLGSIV S LL  VT   +VP                    TFGLVYTVYATA DPKKG++G IAPIAIGFIVGANIL  G F+G SMNPA S
Sbjct:    6 IAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVS 201          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
TIP21_MAIZE1.111e-7171.21Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP11_ARATH7.713e-6565.82Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH1.231e-6263.50Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ORYSJ1.362e-6163.13Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE7.471e-6061.11Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_MAIZE1.558e-5761.75Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP12_ORYSJ3.470e-5761.75Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR4.533e-5761.11Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP13_ARATH2.487e-5555.56Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP1_MEDSA1.234e-5460.10Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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