FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 64/184 (34.78%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF+ T + +F    + I   K     A+ P G  A   C G A+   +    +ISG H+NP++T   A       L    Y   Q+LGSI A F LK V     +GG+ VP                    TF L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+
Sbjct:   87 AEFVGTFILIFFATAAPIVNQKY--GGAISPFGNAA---CAGLAVTTIILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQVLGSICAGFALKGVFHPFLSGGVTVPDPTISTAQAFFTEFII----TFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILIAGPTTGGSMNPVRT 259          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 59/189 (31.22%), Postives = 89/189 (47.09%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++  +AEF+ T   V  G+GS   +   +         L  IA   G  +        ++SG H+NPAVT GL +   ++IL G FY ++Q +G+I  + ++K  T     GGL V                     TF LV+ V+    D ++  +   AP+AIG  + A  LAA  ++G SMNPARS
Sbjct:   23 WRMLVAEFLGTFFLVAIGIGSTTGWTDYSPT-------LTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVGGLGVT--GIAPGLSTGQGVLIEALITFMLVFVVHG-VCDNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARS 201          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 60/180 (33.33%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  158 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +AE   T   +FAG G A+  N         P     +AI  G A+ V V    +ISG H NPAVT   A  G+        Y +AQ+LG+ +AS  L+++ GG                        TF L++ +   A D +  ++G +A +A+G  +  N+L AGP SG SMNPARS
Sbjct:   47 IAEIFGTYFLMFAGCG-AVTINASKNGQITFPG----VAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPVSGASMNPARS 219          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 61/191 (31.94%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  125 DSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            D F     K  ++E +ST L VF   G+A  +      +  D    +  ++  G  + V +    +ISG H+NPAVT   A+      +   FYW AQ  GSI ASF+LK V   +AV                     TF +++   A A D +  ++G +A +A+G  V    + AG  SGGSMNPAR+
Sbjct:   39 DIFPPHLLKKVVSEVVSTFLLVFVTCGAAGIYG-----SDKDRISQLGQSVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGSICASFVLKAVLHPIAV-LGTTTPTGPHWHSLVIEIIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAVSGGSMNPART 221          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 64/198 (32.32%), Postives = 91/198 (45.96%), Query Frame = 2
Query:  116 RFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIA----FNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            R D   S+   +  +AE + T   +FAG  S +     +N +T            IAI  G  L V V    +ISGGH NPAVT   A   +  ++    Y +AQLLGSI+AS  L+++  G                        TF L++ +   A D +  ++G  A IAIG  +  N++  GP +G SMNPARS
Sbjct:   27 RSDSLVSVPFLQKLVAEAVGTYFLIFAGCASLVVNENYYNMIT---------FPGIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNR--AVGEFAGIAIGSTLLLNVIIGGPVTGASMNPARS 213          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 58/187 (31.02%), Postives = 86/187 (45.99%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++  L E + T   +F GVGS  +              +  IA   G  +        ++SG H+NPAVT G  + G+I+IL   FY I Q +G+I  + ++KV   G+A   +   +                 TF LV+ V A  +DP +  +   AP+A+G  + A  L A   SG SMNPARS
Sbjct:   23 WRMLLGELVGTFFLIFVGVGSTTS------------GSVPQIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKA-VSDPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARS 196          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 60/190 (31.58%), Postives = 89/190 (46.84%), Query Frame = 2
Query:  128 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +FS+   +  +AE   T   +FAG G A+  N+        P     +AI  G A+ V V    +ISG H NPAVT   A   +        Y  AQ+LG+ +A+  L+++ GG                        TF L++ +   A D +  ++G +A +A+G  +  N+L AGP SG SMNPARS
Sbjct:   41 AFSVPFIQKIIAEIFGTYFLIFAGCG-AVTINQSKNGQITFPG----VAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPGTLPAGSDVQSLVLEFIITFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPISGASMNPARS 223          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 56/183 (30.60%), Postives = 88/183 (48.09%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            K  ++E ++T L VF   G+A  + +  A  +      +  ++  G  + V +    +ISG H+NPAVT   A       +   FYW AQ  G++ A+F+LK V   +AV                     TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+
Sbjct:   55 KKVISEVVATFLLVFVTCGAASIYGEDNARISQ-----LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQPIAV-IGTTTPSGPHWHALAIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPART 229          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 59/180 (32.78%), Postives = 83/180 (46.11%), Query Frame = 2
Query:  158 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +AE I T   +FAG GS +A NK+             I +  G  + V V     ISG H NPAVT   ++ G+        Y IAQL+GSI+AS  L ++                           +F L++ +   A D +  ++G +A IA+G  +  N+  AGP SG SMNPARS
Sbjct:   46 IAEAIGTYFVIFAGCGS-VAVNKIYGSVTFP-----GICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSNGQSLAIEIIISFLLMFVISGVATDDR--AIGQVAGIAVGMTITLNVFVAGPISGASMNPARS 217          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 62/184 (33.70%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF+ T + +F      I   K   D A     L+  A C G A+ + +    +ISG H+NP++T   A            Y  AQ+  SI ASF LK V     +GG+ +P+ +                 TF L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+
Sbjct:   82 AEFVGTFILIFTATAGPIVNQKY--DGA---ETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVFHPFMSGGVTIPSVSLGQAFALEFII------TFILLFVVTAVATDTR--AVGELAGIAVGATVMLNILVAGPSTGGSMNPVRT 252          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
NIP31_ORYSJ1.334e-1634.78Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
AQP_ANOGA1.742e-1631.22Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
NIP11_MAIZE2.972e-1633.33Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP21_MAIZE3.882e-1631.94Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
NO26_SOYBN5.070e-1632.32Nodulin-26 OS=Glycine max PE=1 SV=2[more]
AQP_DROME5.070e-1631.02Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
NIP11_ORYSJ8.648e-1631.58Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NIP23_MAIZE1.129e-1530.60Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP1_NICAL1.129e-1532.78Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP51_ARATH1.475e-1533.70Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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