FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 61/184 (33.15%), Postives = 86/184 (46.74%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-----TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF+ T + +F    + I   K     A+ P G  A   C G A+   +    +ISG H+NP++T   A       L    Y   Q L S+ A+F LK V     +GG+ VP                    +F L++ V A A D +  ++G +A IA+G  V  NIL AGP +GGSMNP R+
Sbjct:   78 AEFVGTFILIFFATAAPIVNQKY--GGAISPFGNAA---CAGLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGVFHPFLSGGVTVPDATVSTAQAFFTEFII----SFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILVAGPTTGGSMNPVRT 250          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = 2
Query:  119 FDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNK-MTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            F D F     K  ++E ++T L VF   G+A  + + M   + L  S      +  G  + V +    +ISG H+NPAVT   A       +   FYW AQ  G++ A+F+L+ V   + V                     TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+
Sbjct:   42 FADIFPPNLLKKVISEVVATFLLVFVTCGAASIYGEDMKRISQLGQS------VVGGLIVTVMIYATGHISGAHMNPAVTLSFAFFRHFPWIQVPFYWAAQFTGAMCAAFVLRAVLYPIEV-LGTTTPTGPHWHALVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPART 226          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 55/183 (30.05%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            K  ++E ++T L VF   G+A  + +     +      +  ++  G  + V +    +ISG H+NPAVT   A       +   FYW AQ  G++ A+F+LK V   +AV                     TF +++   A A D +  ++G +A +A+G  V    + AGP SGGSMNPAR+
Sbjct:   52 KKVISEVVATFLLVFVTCGAASIYGEDNRRISQ-----LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLHPIAV-IGTTTPSGPHWHALLIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPART 226          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 61/192 (31.77%), Postives = 91/192 (47.40%), Query Frame = 2
Query:  125 DSFSLGSFKAYLAEFISTLLFVFAGVGSA-IAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            D F     K  ++E ++T L VF   G+A I+ + ++  + L  S      I  G  + V +    +ISG H+NPAVT   A+      +   FYW AQ  G+I ASF+LK V   + V                     TF +++   A A D +  ++G +A +A+G  V    + AG  SGGSMNPAR+
Sbjct:   41 DFFPPHLLKKVVSEVVATFLLVFMTCGAAGISGSDLSRISQLGQS------IAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIHPVDV-IGTTTPVGPHWHSLVVEVIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAISGGSMNPART 223          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A LAEF+ +LL+   G+G+++ +       A  P G++  A+  G A    V    ++SGGH+NPA+T    L  Q+++   + Y +AQLLG++  + +L  VT     G L +   +                  F  +  V+A+  D   G  G+ A + +GF +    L   PF+G  MNPARS
Sbjct:   10 WRAILAEFLGSLLYTLLGLGASLRW-------APGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVGPGQGTVVELLLTAQF--ILCVFASFDDRHDGRPGS-AALPVGFSLALGHLFGIPFTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 62/192 (32.29%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKK----GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++  +AEF++T LF++  + + +  +K T+  A    G+  IA   G  +   V   A ISG H+NPAVTFGL L  ++++   +FY I Q LG+I    ++K    GL +      +                  TF LVYTV+ +A D K+      +  +AP+ IGF V    LA    +G  +NPARS
Sbjct:   53 YRPGIAEFVATFLFLYISILTVMGVSKSTSKCAT--VGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARS 240          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 64/198 (32.32%), Postives = 92/198 (46.46%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----------TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S+   +  + EF+ T   +FAG  SAI  N+        P  L  IA+  G  + V +    ++SG H NPAV+   A   +        Y  AQLLGS +A+ +L++V           G + V T+                  TF L++ + A A D  K + G+ A IAIG  +  +IL +GP SG SMNPARS
Sbjct:   38 SVSFVQKLIGEFVGTFTMIFAGC-SAIVVNETYGK----PVTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTY---PSNSNTTSFVMEFIATFNLMFVISAVATD--KRATGSFAGIAIGATIVLDILFSGPISGASMNPARS 225          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 64/190 (33.68%), Postives = 87/190 (45.79%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATA-------ADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF  T   VF G GSAI        AA  P    G + +A+  G   L +A A+G  ISGGH NPAV+ GL + G++     I YW+AQ+LG+I A+ +L V+  G    +                     GL+  +  TA             +    APIAIGF +    L + P +  S+NPARS
Sbjct:    7 AEFFGTFWLVFGGCGSAIL-------AAAFPELGIGFLGVALAFGLTVLTMAYAVGG-ISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAGFAPIAIGFGLTLIHLVSIPVTNTSVNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 64/190 (33.68%), Postives = 87/190 (45.79%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATA-------ADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF  T   VF G GSAI        AA  P    G + +A+  G   L +A A+G  ISGGH NPAV+ GL + G++     I YW+AQ+LG+I A+ +L V+  G    +                     GL+  +  TA             +    APIAIGF +    L + P +  S+NPARS
Sbjct:    7 AEFFGTFWLVFGGCGSAIL-------AAAFPELGIGFLGVALAFGLTVLTMAYAVGG-ISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAGFAPIAIGFGLTLIHLVSIPVTNTSVNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 61/197 (30.96%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  128 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG---GLAVPTHN----XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S S+   +  +AE + T   +FAG  +A+A N     A   P     IAI  G  + V V    +ISG H NPAVT   A  G+  +     Y I+Q++GS +A+  L+++ G    +    H+                     TF L++ +   A D +  ++G +A +A+G  V  N++ AGP SG SMNP RS
Sbjct:   45 SISVPFLQKLMAEVLGTYFLIFAGC-AAVAVNTQHDKAVTLPG----IAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRS 234          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
NIP31_MAIZE1.927e-1533.15Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
NIP22_ORYSJ3.286e-1530.41Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP22_MAIZE4.292e-1530.05Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
NIP21_ORYSJ9.561e-1531.77Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
MIP_CHICK9.561e-1529.63Lens fiber major intrinsic protein OS=Gallus gallu... [more]
PIP11_MAIZE2.130e-1432.29Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
NIP31_ARATH4.745e-1432.32Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
AQPZ_BRUAB4.745e-1433.68Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA24.745e-1433.68Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
NIP12_ARATH6.197e-1430.96Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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