FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKV----VTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++  +AE I T   V  GVGS       T  +   PS +  IA   G  +        +ISG H+NPAVT G  + G+++I+  + Y   Q +G+I  + ++KV       GL +   +                 TF LV  V    +DP +  +   AP+A+G  + A  L A   +G SMNPARS
Sbjct:   23 WRQLMAELIGTFFLVVIGVGSC------TGGSEWSPS-IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKG-VSDPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARS 202          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 70/205 (34.15%), Postives = 87/205 (42.44%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS----------GL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL-------KVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPK--KGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            K  +AEFI T + VF G GSA A   M A     P+          GL   VAI +  GFA+  ++    NISG H+NPAVT GL    +      + Y IAQLLG+   SF+            GGL                       TF L+ T+   A D +  KG  G    I IG  V   I   G  SG S+NPAR+
Sbjct:    6 KRCIAEFIGTFILVFFGAGSA-AVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATA--PFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAG----IIIGLTVAGIITTLGNISGSSLNPART 203          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_ORYAF (Aquaporin-2 (Fragment) OS=Orycteropus afer GN=AQP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   KA  +EF++TLLFVF G+GSA+ + +        PSGL  IA+  G A+   V    +ISG H+NPAVT    +G  ++ L  IFY  AQLLG++  + LL  +T
Sbjct:    1 SIAFSKAVFSEFLATLLFVFFGLGSALNWPQAL------PSGL-QIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRAIFYVAAQLLGAVAGAALLHELT 103          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 60/197 (30.46%), Postives = 91/197 (46.19%), Query Frame = 2
Query:  128 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG---GLAVPTHN----XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S S+   +  +AEF+ T   VF G  S +    M  D  +   G   IAI  G  + V +    +ISG H+NPAVT   A  G+  +     Y I+Q++GS +A+  L+++ G    +    H+                     TF L++ +   A D +  ++G +A +AIG  V  N+L A P S  SMNP RS
Sbjct:   48 SVSVPFLQKLIAEFLGTYFLVFTGCASVVV--NMQNDNVVTLPG---IAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNR--AIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRS 237          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 63/190 (33.16%), Postives = 86/190 (45.26%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATA-------ADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF  T   VF G GSAI        AA  P    G + +A+  G   L +A A+G  ISGGH NPAV+ GL + G++     I YW+AQ+LG+I A+ +L V+  G    +                     GL+  +  TA             +    APIAIGF +    L + P +   +NPARS
Sbjct:    7 AEFFGTFWLVFGGCGSAIL-------AAAFPELGIGFLGVALAFGLTVLTMAYAVGG-ISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAGFAPIAIGFGLTLIHLVSIPVTNTWVNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP33_ORYSJ (Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 59/193 (30.57%), Postives = 92/193 (47.67%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK-----VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S+   K   AEF  T + +F  + + I   +  +   L     + IA   G A+ V V    +ISG H+NPA++  +A+ G +     + Y  +Q+LG++ ASF +K     V  G + VP                    TF L++ + A A DP   ++  +  +A+G  V  NIL AGP +G SMNPAR+
Sbjct:   63 SVPLLKKVSAEFFGTFILIFTVLSTIIMDEQHKSIETL-----LGIATSAGLAVTVLVLSLIHISGCHLNPAISIAMAVFGHLPSAHLLPYISSQILGAVAASFAVKGLYHPVNPGIVTVPN------VGTVEAFFVEFIITFFLLFIITALATDP--NAVKELIAVAVGATVMMNILVAGPSTGASMNPART 242          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 62/190 (32.63%), Postives = 85/190 (44.74%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATA-------ADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF  T   VF G GSAI        AA  P    G + +A+  G   L +A A+G  ISGGH NPAV+  L + G++     I YW+AQ+LG+I  + +L V+  G    +                     GL+  +  TA             +    APIAIGF +    L + P +  S+NPARS
Sbjct:    7 AEFFGTFWLVFGGCGSAIL-------AAAFPELGIGFLGVALAFGLTVLTMAYAVGG-ISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAGFAPIAIGFGLTLIHLVSIPVTNTSVNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_RHOPA (Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 64/194 (32.99%), Postives = 89/194 (45.88%), Query Frame = 2
Query:  155 YLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALF-VAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA------------VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            YLAE I T    FAG GSA+    + A       GLV +++  G ++  +A AIG +ISG H+NPAVT GLA GG+  +     Y IAQ+LG+I A+ LL ++  G A               H+                    L   + +T      G     AP+AIG  +    L + P +  S+NPARS
Sbjct:    6 YLAEMIGTFWLTFAGCGSAV----IAAGFPQVGIGLVGVSLAFGLSVVTMAYAIG-HISGCHLNPAVTLGLAAGGRFPVKQIAPYIIAQVLGAIAAAALLYLIASGAAGFDLAKGFASNGYGAHSPGQYNLVACFVMEVVMTMMFLFVIMGSTHGKAPAG----FAPLAIGLALVMIHLVSIPVTNTSVNPARS 190          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 69/205 (33.66%), Postives = 87/205 (42.44%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS----------GL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL-------KVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPK--KGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            K  +AEFI T   VF G G+A A   M A     P+          GL   VAI +  GFA+  ++    NISG H+NPAVT GL    +      + Y IAQLLG+  ASF+            GGL                       TF L+ T+   A D +  KG  G    I IG  V   I   G  +G S+NPAR+
Sbjct:    6 KRCIAEFIGTFFLVFFGAGAA-AITLMIASGGTAPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATA--PFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKGFAG----IIIGLTVAGIITTIGNITGSSLNPART 203          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   +A L+EF++TLLFVF G+GSA+ + +        PS ++ IA+  G A+   V    +ISG H+NPAVT    +G  ++ L  +FY  AQLLG++  + LL  +T
Sbjct:    1 SIAFSRAVLSEFLATLLFVFFGLGSALNWPQAL------PS-VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALLHELT 103          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
AQP_HAEIX6.197e-1430.32Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQPM_METTM1.803e-1334.15Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
AQP2_ORYAF1.803e-1341.82Aquaporin-2 (Fragment) OS=Orycteropus afer GN=AQP2... [more]
NIP11_ARATH2.355e-1330.46Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
AQPZ_BRUME3.076e-1333.16Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
NIP33_ORYSJ4.017e-1330.57Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica G... [more]
AQPZ_BRUSU6.852e-1332.63Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
AQPZ_RHOPA8.949e-1332.99Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ ... [more]
AQPM_METTH8.949e-1333.66Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
AQP2_PROHA1.169e-1239.09Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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