FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 53/180 (29.44%), Postives = 79/180 (43.89%), Query Frame = 2
Query:  158 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +AE I T   +F+G G  +  N +       P     I +  G  + V +    +ISG H NPAVT   A+  +        Y  AQL GS++AS  L+++                           +F L++ +   A D +  + G +A IA+G  +  N+  AGP SG SMNPARS
Sbjct:   46 IAEMIGTYFIIFSGCG-VVVVNVLYGGTITFPG----ICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARS 218          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 64/193 (33.16%), Postives = 91/193 (47.15%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALF-VAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKV---------VTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            K Y AE I T    FAG GSA+    + A       GLV +++  G ++  +A AIG +ISG H+NPAVT GLA GG+      + Y IAQ+ G+IVA+ LL +         VT G A   ++                    +++      A   +   G  AP+AIG  +    L + P +  S+NPARS
Sbjct:    4 KKYAAEAIGTFWLTFAGCGSAV----IAAGFPQVGIGLVGVSLAFGLSVVTMAYAIG-HISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQYSMMACFLTEVVMTMMFLFIIMGATHGRAPAG-FAPLAIGLALVMIHLVSIPVTNTSVNPARS 190          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 58/192 (30.21%), Postives = 84/192 (43.75%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYAT--------AADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            FK   AEF+ T   V  G GSA+  +           GL+ ++   G  +         ISGGH NPAV+ GLA+ G++   + + Y IAQ+ G+I+A+ +L V+  G A                      T  LV  V  T         +  ++   G  APIAIG  +    L + P +  S+NPARS
Sbjct:    2 FKKLCAEFLGTCWLVLGGCGSAVLASAFPQVGI----GLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG-FAPIAIGLALTLIHLVSIPVTNTSVNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 61/192 (31.77%), Postives = 88/192 (45.83%), Query Frame = 2
Query:  158 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTH--------NXXXXXXXXXXXXXXXXXTFGLVYTVYATAA----DPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            LAEF  TL  V+   GS +A N   +D  +    +  I +  GFA    +   + ISG  +NPAVT G    G++ IL GI + I Q +G++V + ++K      ++PT                           T  LV+ V   A     DPK   +  +AP+AIG  V A +     F+GGS+NPARS
Sbjct:   35 LAEFFGTLFVVYIVSGSTLAANFAVSDPIVR---VCLICLVQGFAFAAIIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKA-----SLPTFYERDLSATTLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPK---ISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARS 215          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   +A LAEF++TLLFVF G+GSA+ + +        PS ++ IA+  G A+   V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + LL  +T
Sbjct:    1 SIAFSRAVLAEFLATLLFVFFGLGSALNWPQAM------PS-VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALLHEIT 103          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_DASNO (Aquaporin-2 (Fragment) OS=Dasypus novemcinctus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   +A LAEF++TL+FVF G+GSA+++ +        PS ++ IA+  G A+   V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + +L  +T
Sbjct:    1 SVAFSRAVLAEFLATLIFVFFGLGSALSWPQAL------PS-VLQIALAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEIT 103          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 58/184 (31.52%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK-----VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AEF  T   +F  + + I   +           L+ IA   G A+ V V    +ISG H+NPAV+  + + G +     + Y  AQ+LGSI ASF +K     V  G + VP                    TF L++ + A A DP   ++  +  +A+G  +  N L AGP +G SMNPAR+
Sbjct:   99 AEFFGTFTLIFTVLSTIIMDEQHKG-----VESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVKGMYHPVNPGIVTVP------KVGTVEAFFLEFVTTFVLLFIITALATDP--NAVKELIAVAVGATIMMNALVAGPSTGASMNPART 269          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   +A  AEF++TL+FVF G+GSA+ + +        PS ++ IA+  G A+   V    +ISG H+NPAVT    +G  ++ L   FY  AQLLG++  + LL  VT
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSALNWQQSL------PS-VLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALLHEVT 103          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 53/180 (29.44%), Postives = 79/180 (43.89%), Query Frame = 2
Query:  158 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +AE I T   VF+G G  +  N +       P     I +  G  + V +    +ISG H NPAVT   A+  +        Y  AQ  GS++AS  L+++                           +F L++ +   A D +  ++G +A IA+G  +  N+  AGP SG SMNPARS
Sbjct:   46 IAEMIGTYFIVFSGCG-VVVVNVLYGGTITFPG----ICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFGTTPADSPARALVAEIIISFLLMFVISGVATDNR--AVGELAGIAVGMTIMVNVFVAGPISGASMNPARS 218          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 63/194 (32.47%), Postives = 88/194 (45.36%), Query Frame = 2
Query:  161 AEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFV---AVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA------------VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            AE I T   V  G GSA+        AA  P G+  + +   F L V   A AIG +ISG H+NPAV+FGL +GG+      + Y IAQ++G+I+A+ ++ ++  G A               H+                    LV  + AT A    G     APIAIG  +    L + P +  S+NPARS
Sbjct:    9 AELIGTFWLVLGGCGSAVL-------AASSPLGIGVLGVAFAFGLTVLTMAFAIG-HISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG----FAPIAIGLALTLIHLISIPVTNTSVNPARS 190          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
NIP42_ARATH1.526e-1229.44Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
AQPZ_BRAJA1.526e-1233.16Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
AQPZ2_RHIME1.526e-1230.21Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
AQPB_DICDI1.526e-1231.77Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
AQP2_HORSE1.526e-1239.09Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]
AQP2_DASNO1.994e-1237.27Aquaporin-2 (Fragment) OS=Dasypus novemcinctus GN=... [more]
NIP32_ORYSJ2.604e-1231.52Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
AQP2_TALEU2.604e-1239.09Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]
NIP41_ARATH3.401e-1229.44Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
AQPZ_PSEPK3.401e-1232.47Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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